Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03660 ATGGCTTCTAACCTCACCATGGAAGAATGTGATGAGGAGGTGCACGTAGCAGTTGGGAAGTCGGTGAAGAAAGCTGCGACTTTGCTTCAATGGAGTTTCGCCCACTTTAGGAACACACATATTCGCTTACTTCATGTTTACCAACCTTCTGCTATGATCCCCACACTATTAGGAAAATTGCCAGCATCCCAGGCTGATCCTGGAGTGGTGTCTGCTTTTAGAATGGAGGAAAGAGAACAGACCATGAGTCTTTTGGAGAAGTACTTGAGCATTTGCCGTGCAGCTAAGGTATTAATTTCTTTTCAGGTTAAGGCAAGCAGTGTCGTAGGCGAAGCTGATCAAGTCCAGAAAGGGATTGTTGATTTGATTATTAAGCATAATATCAGGAAGCTTGTTATTGGAGCAATACCAGAAAATTGCATGAAAGTCAAAAGGAATTCCAGTAAAGCAAATTATGTTGCCAAAAATGCTCCTCTGTTTTGTGAAATATGGTTTATCTATAAAGGTAAACACATTTGGACAAGAGAAGCTTCTGAAACTCCTCATTCTTTGTCTCCATGCGCTCAACCTGAGACTATAGCTGCAGAAAGCTTGAGTTGTAGATCTTTTCAATGTGGTATGAATGAATTATTCCATTCAGATAATCTTCAATCAAATTCTACAAGGACAACAATAAGTACTGGAGTTGGATGTTGGGTGCAGAATGAAATAATTGATACAGAAGCCACTTCTTTATCCAAATCATCTTGTTGTAATAGTCATTGTTATTCCCAAAATTCTGTTGAGAGGTATTTAGATACTCATTCAGAGGTTGAGGAAGAAACAGTTAATAATCAACTTATTGAAGCCAAAAGAGAAGCTGATGCAGCTATAGATGAGGCCTTTGCTGAGCTGTTGAAGTGTAAAAGTTTGGAAGCAAAAGCCATTGAGGCCATAAATAAGATCAATTTGTTTGAATCTGCCCATGCGCATGAAGTAAAGCTCAGAAAAGAGGCTAATGATGCACTGAGAGCTACAGTACAGGAGCTACAGAAGTTATTGAATGAGAAAGAAGAAATTGATAATGAGCTACAAAGGACCATGAGAAGTATTTCCCTTCTAGACAGTTGTGCACAGGAAACCAACCATAGGCGAGTTGATGCTGCAGATGAACTATCACTGATTCAAGCATCCATCACAAACCTGTGGCATGAAAAGCAGCAGATCAGGCGACAGAAAATGGAAGCCCTGCGCTGGCTTGAGCGGTGGAAAAGTCGTGGACAAATTGCAGCAGCTAACTGCAATGGGGTCATTGGGTTTGCTGAAGCATTGCCTGAGCTAGCAGAGTTTTCATCATCAGATCTTCAAAATGCCACATGTGACTTTTCAGAGAGCTTCAAGATTAGGCAGGGTGGGTATGGTTCTATTTATAAGGGGGAAATGTTGGGTAGAACTGTTGCTATAAGGAAGCTTCATCCACAAAATATGCAAGGACCAGCAGAGTTTCATCAAGAGGTTCAAGTACTTGGTAGTCTCCAGCACCCTCATCTGTTGACTTTGCTTGGTTTCTGCTCTGAAGCCTGGTCACTTGTATATGAGTACTTGCCCAATGGAACTCTCCAAGACTACCTATTCCGGAAAAGCAATCTTCCCCCTTTAACATGGAATATCCGAGCACGATGGATTGCTGAAATTGCTAAAGCTCTATGCTTCTTACATTCTTCCAAACCTGAAACTATTGTCCATGGTGATCTGAAGCTTGAAACTGTCATTCTTGATTCTGCACTCAGTTGCAAGATATGTGAATTTGGGTTCAGCAGGCTGGTGACAGAGGAGTCACTCTATCTTCCTAGTTTCCGCTTCAGTACTTTGCCAAAGGGATCTTTTACATATACAGATCCCGAGTTTCAGAGAACTGGAATACTAACACCTAAGTCTGACATATACTCTTTTGGGCTTATCATTTTGCAACTCCTCACTGGTAGGACTCTAGTTGGATTAGTTGGAGAAGTACGCAAAGCAGTTTCATGTGGAAAATTGTCTTCAATTTTGGATTCTTCAGTTGGAGAATGGGATTCCGCTGTTGCAACACGATTGGTTGAACTAGGATTGCAATGCTGCCGACAAAATAGTAGAGACAGACCAGAGTTAACACCTTCTCTAGTGAGAGAATTGGATCAGTTGCATGTTTCAGAAGAGCAACCTGTGCCATCTTTTTTCTTGTGTCCAATCCTTCAGGAAATAATGTATGATCCTCAAGTTGCAGCAGACGGATTTACTTATGAAGGGAAGGCTATAAGTGAATGGTTGGAAAATGGACACGAAACTTCACCCATGACTAATTTAAAATTGAGTCACCTCCATCTTACTCCCAATCATGCACTTCGACTTGCTATCCAATGCTGGCTTTGCAAATATTAA 2400 0.4121 MASNLTMEECDEEVHVAVGKSVKKAATLLQWSFAHFRNTHIRLLHVYQPSAMIPTLLGKLPASQADPGVVSAFRMEEREQTMSLLEKYLSICRAAKVLISFQVKASSVVGEADQVQKGIVDLIIKHNIRKLVIGAIPENCMKVKRNSSKANYVAKNAPLFCEIWFIYKGKHIWTREASETPHSLSPCAQPETIAAESLSCRSFQCGMNELFHSDNLQSNSTRTTISTGVGCWVQNEIIDTEATSLSKSSCCNSHCYSQNSVERYLDTHSEVEEETVNNQLIEAKREADAAIDEAFAELLKCKSLEAKAIEAINKINLFESAHAHEVKLRKEANDALRATVQELQKLLNEKEEIDNELQRTMRSISLLDSCAQETNHRRVDAADELSLIQASITNLWHEKQQIRRQKMEALRWLERWKSRGQIAAANCNGVIGFAEALPELAEFSSSDLQNATCDFSESFKIRQGGYGSIYKGEMLGRTVAIRKLHPQNMQGPAEFHQEVQVLGSLQHPHLLTLLGFCSEAWSLVYEYLPNGTLQDYLFRKSNLPPLTWNIRARWIAEIAKALCFLHSSKPETIVHGDLKLETVILDSALSCKICEFGFSRLVTEESLYLPSFRFSTLPKGSFTYTDPEFQRTGILTPKSDIYSFGLIILQLLTGRTLVGLVGEVRKAVSCGKLSSILDSSVGEWDSAVATRLVELGLQCCRQNSRDRPELTPSLVRELDQLHVSEEQPVPSFFLCPILQEIMYDPQVAADGFTYEGKAISEWLENGHETSPMTNLKLSHLHLTPNHALRLAIQCWLCKY. 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03660 799 ProSiteProfiles U-box domain profile. 728 799 IPR003613 GO:0004842|GO:0016567
Seca3g03660 799 Gene3D HUPs 15 164 IPR014729 -
Seca3g03660 799 Pfam U-box domain 729 798 IPR003613 GO:0004842|GO:0016567
Seca3g03660 799 CDD RING-Ubox_WDSUB1-like 730 785 - -
Seca3g03660 799 SMART Ubox_2 732 795 IPR003613 GO:0004842|GO:0016567
Seca3g03660 799 Gene3D Transferase(Phosphotransferase) domain 1 528 729 - -
Seca3g03660 799 ProSiteProfiles Protein kinase domain profile. 455 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03660 799 PANTHER OS02G0152300 PROTEIN 13 793 - -
Seca3g03660 799 Gene3D Phosphorylase Kinase; domain 1 432 527 - -
Seca3g03660 799 Coils Coil 329 363 - -
Seca3g03660 799 SUPERFAMILY RING/U-box 726 798 - -
Seca3g03660 799 Coils Coil 273 297 - -
Seca3g03660 799 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 730 799 IPR013083 -
Seca3g03660 799 Pfam Protein tyrosine and serine/threonine kinase 460 711 IPR001245 GO:0004672|GO:0006468
Seca3g03660 799 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 31 158 - -
Seca3g03660 799 SUPERFAMILY Protein kinase-like (PK-like) 439 711 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03660 Seca-Chr3 65979369 65985630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03660 11 796 U-box Gene Family AT2G45910 36.881 9.27e-162 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca3g03660 PK_Tyr_Ser-Thr 5.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03660 - - gmx:100799032 1216.06