Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03656 ATGGGAGTTTGTTTGAGCCTCCAACTTAAAGCTGAGAGCCCATTTAACACTGGGTTAAGGTCAAAGTATGTGAGTGTGGATGCAAAAGATCTCAGTACACCATGTATTAAGGTTGCTGATGACCTCAGCAGCCAAAGTAGTGAGGCCTCAGTGGATTCAGTGCCTCAGACTCCCCCAAGTGTGGGTGAGATCTTGCAGCCATCCAACCTGAAGAGCTTTACTTTGACAGAACTTAAGGCTGCCACCAGGAATTTCCGTGCAAGTGGTTTTGGATCAGTTTTTAAGGGATGGATTGATGAACACTCACTTTCTGCTGCCAAACCTGGCACTGGCATTGTTGTTGCTGTTAAAAGACTTAACCAAGATGGCTTCCAATGTCACGAGGAGTGGATGGCAAAGCATGGTATAATTCAAGAAGCAAGTCTCGAGGGTGAAGTCAGCTATCTAGGACAGCTTTCTCATCCTCATCTAGTGAAATTGATTGGTTATTGCCTTGAAGATGAAAACCGCCTTCTGGTCTATGAATTCATGCCTCGTGGCAGCTTGGAGAATCACTTGTTCATGAGAGGATCCTATTTTCAACCTCTTTCTTGGAGCCTCCGTTTGAAGGTCGCTCTTGGTGCTGCCAAAGGCCTTGCATTTCTTCACAGTGCTGAAACACAAGTGATATACCGGGATTTCAAGACTTCAAATGTCTTGCTAGATTCAAATTATAATGCAAAACTTTCTGATCTTGGGCTGGCAAAGGATGAACCAACAGGTGAAAAAAGTCATGCCCCCATGGGAACCTACGGATATGCAGCTCCTGAATACCTGGCCAGTGGTCATCTGACTGCTAAGAGTGATGTGTATAGCTTTGGAGTTGTCCTACTGGAAATATTGTCAGGAAGGCGGGCTCTTGACAAGAATAGGCCATTAGGACAGCACAATTTGGTGGAATGGGCTAAGCCTTACTTAGGCAACAAGCGTAAGATTTTGCGTGTGTTGGATAACCGTCTTGAAGGCCAATATGAGTTAGATGAGGCCTATAAGGTAGCTACCCTTTCCCTCCAATGCCTTTCAACAGAAGCCAAATCGAGACCAGACATGGATGAGGTTGTTACAATTTTGGAGCAGCTGCAGGCTCCCCATGTAAATAGAGGCAAACAAAATTGTTCTCGTAGGAAAAGTGCTGATGATGTTATCCATCCTAGAACCGCCACAGCTTATCGCCGACCTTCTGCTTCGTCCCTCTTACCATGA 1242 0.4549 MGVCLSLQLKAESPFNTGLRSKYVSVDAKDLSTPCIKVADDLSSQSSEASVDSVPQTPPSVGEILQPSNLKSFTLTELKAATRNFRASGFGSVFKGWIDEHSLSAAKPGTGIVVAVKRLNQDGFQCHEEWMAKHGIIQEASLEGEVSYLGQLSHPHLVKLIGYCLEDENRLLVYEFMPRGSLENHLFMRGSYFQPLSWSLRLKVALGAAKGLAFLHSAETQVIYRDFKTSNVLLDSNYNAKLSDLGLAKDEPTGEKSHAPMGTYGYAAPEYLASGHLTAKSDVYSFGVVLLEILSGRRALDKNRPLGQHNLVEWAKPYLGNKRKILRVLDNRLEGQYELDEAYKVATLSLQCLSTEAKSRPDMDEVVTILEQLQAPHVNRGKQNCSRRKSADDVIHPRTATAYRRPSASSLLP. 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03656 413 Gene3D Transferase(Phosphotransferase) domain 1 177 396 - -
Seca3g03656 413 Pfam Protein tyrosine and serine/threonine kinase 89 369 IPR001245 GO:0004672|GO:0006468
Seca3g03656 413 Gene3D Phosphorylase Kinase; domain 1 63 176 - -
Seca3g03656 413 ProSiteProfiles Protein kinase domain profile. 79 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03656 413 PANTHER OS01G0588500 PROTEIN-RELATED 49 374 - -
Seca3g03656 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Seca3g03656 413 SUPERFAMILY Protein kinase-like (PK-like) 70 377 IPR011009 -
Seca3g03656 413 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 177 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03656 Seca-Chr3 65915273 65919618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03656 71 370 Glycoside Hydrolase AT3G07070 45.806 1.40e-84 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca3g03656 PK_Tyr_Ser-Thr 3.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03656 - - lja:Lj3g3v3200890.1 576.63