Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03652 ATGCATTTCACTTCTGGTATCCTAACAGAGTTTGCAGAGGCATTAAGGCTAAGAAGACCAACTCTGTCATTCGTAAGCGTGTCAGGGTTCAACTCAAAAAATGGGAAGAAGATTGACGCATTTGTCTCAAATTATGGTTGCTTAAACTTCATAGAAGAGAATGATAAAGTCTTGATAGCTGGATTTGGACGAAAAGGTCATGTCATGGGTAACAATACTTAA 222 0.3829 MHFTSGILTEFAEALRLRRPTLSFVSVSGFNSKNGKKIDAFVSNYGCLNFIEENDKVLIAGFGRKGHVMGNNT. 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03652 73 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 33 65 IPR006032 GO:0003735|GO:0005840|GO:0006412
Seca3g03652 73 Gene3D - 24 72 IPR012340 -
Seca3g03652 73 Pfam Ribosomal protein S12/S23 32 70 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03652 Seca-Chr3 65847984 65850245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03652 33 71 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 79.487 3.02e-17 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03652 K02973 - elk:111148316 69.707