Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03645 ATGGTCTTGCAGAAGAGATTAGACTACGGATTTAATGGCTACAGGGCACCGGCCACACCTCAAGCCATCCGATCAACTAGGAGGAGATCTAAATTTCAAAGAAGAGCAGAGGACAATCAAATGTGTGCATTTGACTTATTGGCCACCGTAGCTGGTAAATTGTTGCAAGAGAAAGAGAACACAACCATGTATAGTGATACATCATCAGAAAAGGATCAGCATGGATCTGTAAAAGAGTCCCAAGATGCAAATAAATCATTCAAAGCTGAGGTTTCTGATGAAGGAAGTTGTGACAAAAAATGTTTCTCTATTCTTTCTTCTCAAACAAACAATCAAAACTCCCCTTTGAAAGAATTACCACATCCTGAAGTTGATGGCCATTCAGGCATTGCTTCTACAGTAACAGGTTCTAGTTACTCAGAGAGGTTCGATGCAGAGAAATTGGTAGATGGAAAAAGCCATAACAAAAAGGAAAATGATACTAGCAAAGTTAAATTAGATTCTTCTGGTTATCCAGTAGATAGTAGTTTCAAGTTAGATGTTGATACAAGTAGAGTAAAGGATGAGCTGCATAAGTTTGAGAAGGTACCAATTGGCAATGGGACTGAGATGTGCATTAATGACAGGATTCCATGTAGCTCATTGTCCAGAGGTTGTGACAATGTACCAGTAGTTAGTAGAGATGATGACGAAAACTCTTCAGGGTGTACTCACCCTAGTACAAAAACCAAGTCCTTTAGGACAAAGGCTTGTACATGTGATAATAGAATAGGGAAAATATTGGCTTCTAAATTTCAGAAAGTTGCTGAAAAATCAAAGGATGATATACTTTCTGACAGTGATGGAGATTTGAAGCGAACTTACTGCAGTAAGAAGAAGTGCTGTAAGCGCCAACGTTCTCAGATGAATGTTCCTTTCAAAAAGAGGAAACTTTTCAGTTGTAGCTCTGTTTCAAATTCCAACAGATTTATCAGTACTGGTGGCATTTATTATTCACCTGAGAATGGTATGAATCAAGGTGCTTCTGGTTCATCTCCTGGGATGCGCAAAGACCCTGGAATATCATCCTTGGAAGCATGTCAACACCAGACATTACAATGTAGAAGCTCTCAGGTGAAGCTTAGGATAAAGTCATTTAGAGTGCCAGAGCTTTTTATTGAGGTTCCAGAAACTGCAACCGTTGGGTACTTGAAGAGGACAGTGATGGATGCTGTGACTGCTGCACTTGGGGGAGGATTACACATTGGTGTCATTCTCCAGGGAAAGAAAGTTAGAGATGACAGTAAAACTCTACTTCAAACTGGAATTTCTCATGATAACCAGCTGGATGCTTTGGGTTTCACCCTGGAGCCTAATTCTTCACAAAGCCTATCGATTGTATGTGCTGCACATTCTCCCAATGTTCCTAATGCAGACATTCCTCAGCCTCCAATAAGGTATCCTTCCAGTCCTGCTGTAATTCATCAGAGGATTCAAGGAAATTCCGACGTGTTACCTGAGCATCAAACAACCAGTTTAAGTAACCTTGTTGAAGGTGACCATGATTCAGCTCCTTCAACTATCAATGCATCTGTTGACAAAGGTAGGACAGATTCCAAAGAATTGGTTACTGTTCCTGAAATGGATAAGGAGGAACTAGCCATGGTAACTGTACTTCAGAAGTCAAAGAGATCTGAGATTATGCAGCGCCGGATTCGTAGGCCTTTCTCTGTAGATGAAGTAGAAGCACTGGTTCAAGCAGTTGAGAAACTGGGAACTGGAAGGTGGCGGGATGTTAAACTTCATGCTTTTGAGAACGCAGAGCATCGAACATATGTTGATTTGAAGGATAAATGGAAAACACTGGTACACACGGCAAGAATATCCCCTCAGCAAAGGAGGGGAGAGGCTGTTCCCCAAGACCTTCTGGATAGGGTCCTAATTGCCCATGCATATTGGTCCCAGCAACAGCACCCCGAAACTGTCTTATTTAATAAGGGATTGTCACCGGCACATGGCTTTGTAGATGGGGTTGGTGTTTTGGTTTCTGATTTTTGTTAA 2040 0.4142 MVLQKRLDYGFNGYRAPATPQAIRSTRRRSKFQRRAEDNQMCAFDLLATVAGKLLQEKENTTMYSDTSSEKDQHGSVKESQDANKSFKAEVSDEGSCDKKCFSILSSQTNNQNSPLKELPHPEVDGHSGIASTVTGSSYSERFDAEKLVDGKSHNKKENDTSKVKLDSSGYPVDSSFKLDVDTSRVKDELHKFEKVPIGNGTEMCINDRIPCSSLSRGCDNVPVVSRDDDENSSGCTHPSTKTKSFRTKACTCDNRIGKILASKFQKVAEKSKDDILSDSDGDLKRTYCSKKKCCKRQRSQMNVPFKKRKLFSCSSVSNSNRFISTGGIYYSPENGMNQGASGSSPGMRKDPGISSLEACQHQTLQCRSSQVKLRIKSFRVPELFIEVPETATVGYLKRTVMDAVTAALGGGLHIGVILQGKKVRDDSKTLLQTGISHDNQLDALGFTLEPNSSQSLSIVCAAHSPNVPNADIPQPPIRYPSSPAVIHQRIQGNSDVLPEHQTTSLSNLVEGDHDSAPSTINASVDKGRTDSKELVTVPEMDKEELAMVTVLQKSKRSEIMQRRIRRPFSVDEVEALVQAVEKLGTGRWRDVKLHAFENAEHRTYVDLKDKWKTLVHTARISPQQRRGEAVPQDLLDRVLIAHAYWSQQQHPETVLFNKGLSPAHGFVDGVGVLVSDFC. 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03645 679 SUPERFAMILY Ubiquitin-like 369 455 IPR029071 -
Seca3g03645 679 ProSiteProfiles Myb-like domain profile. 561 616 IPR001005 -
Seca3g03645 679 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 651 IPR031105 -
Seca3g03645 679 SUPERFAMILY Homeodomain-like 567 648 IPR009057 -
Seca3g03645 679 Gene3D - 554 656 - -
Seca3g03645 679 MobiDBLite consensus disorder prediction 110 131 - -
Seca3g03645 679 MobiDBLite consensus disorder prediction 71 89 - -
Seca3g03645 679 Pfam Myb-like DNA-binding domain 566 615 IPR001005 -
Seca3g03645 679 CDD SANT_TRF 567 617 - -
Seca3g03645 679 SMART sant 565 618 IPR001005 -
Seca3g03645 679 MobiDBLite consensus disorder prediction 61 89 - -
Seca3g03645 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 561 620 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03645 Seca-Chr3 65748812 65754375 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g03645 Myb_DNA-binding 8.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03645 - - gmx:100797436 932.939