Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03642 ATGGATAACCCGTTTCTTCTTCCACCTGATCCAAACAATGCTCAAAATCCTTCTTCCTTGTCTACCATTACTACGGAAGAGGACTCTCCCTTGGATGAAATTGATTTCTCTGCCACCGTCCTGCGCTACATAAACCAAATGCTTATGGAGGAGGACATGGAGAAGAAGAGCTGTATGTTCCATGATTCCTTAGCTCTCCAAGCTGCTGAGAAATCTTTTTATGAGGTCATTGGTGAGACATACCCTTCTTCTTCCATCCAAAACTATCACAATGTGGAGAGCCCTGATGGCAGTCTTAGCAGTAACTTCAGTGGTTATAGCGGTACCACTAGTACTAGTAACTCTGAAACCACTTTTCCTGCTGACTTTGTTTTCCAGGCTACTTCAACCTCCAGCTCTCAATCTTCTATGAATAGTACTAGCAACTTCACTGTAACCAATAGTGGATTCTTGGCAAGTTCCAGTGCTGGATTTTCAGATTCAACCTTGCTTAGCAAGAATGAGTCTGTGCTGCAATTTGAGAGAGGCATGGAGGAAGCCAGCAAGTTTCTTCCCAAAGGGAATCCATTGATTATTGACCTGGAAAACAGCTCCTTTATCCCTTCTATTAGAAAGGTACCTCAGCAGGTGGAAATTAAGACGGAAAGGGATTCAAGAGGAAGGAAGAATCATGAGCGGGAAGATGAAACAGATTTACAAGATGAGAGAAGCAACAAGCAATCAGCTGTTTACAGGGATGACAGTGAGGAGCTATCAGAATTATTTGATAAGGTACTGCTGGGCACGGGTAAGGAAGACCAGCCTAATGGACCAGACATGAGCGTGCAGCAGAAAGAAGAAACAAACAAGTCTGGTGGTGGAAAGAGTCGTGTTAAGAAACAAGGCAACAAGAAGGGAGTTGTGGATCTGAGGACACTATTGATTCTATGTGCACAAGCTGTTTCTTCTGATGATCGTGCAACTGCTAATGAGTTATTAAAGCAGATAAGGCAACATTCTTCACCACTGGGTGATGGGTCTCAGAGGCTGGCCCATTGCTTTGCAAATGCCCTTGGAGCACGCTTGGCTGGCACTGGCACTCAGATTTATACTGCTTTATCCTCCAAAAGAACCTCTGCTGCGGACATGGTGAAAGCTTACCAAATGTACATTTCAGCCTGCCCATTCAAGAAGCTTGCAATCATTTTTGCAAACCATACAATTTTGAATCTAGCCAAGGAAGTAGAAACTCTTCATATTGTAGATTTTGGTATCCGTTATGGCTTCCAGTGGCCTGCCCTTATTTTTCGTCTATCAAAACGACCTGGTGGGCCTCCCAAGCTGCGGATTACAGGGATAGAGCTCCCACAACCTGGTTTCAGGCCAGCAGAGAGAGTCCAGGAGACGGGGCTTCGCCTGGCAAGGTATTGTGAGCGCTTCAATGTTCCATTTGAGTTCAATGCTATTGCACAAAAATGGGAAACCATCAAATTTGAGGACTTGAAGATAAAGAAGAATGAACTTCTTGCAGTGCATTGTATGTGTCGATTTAAACATCTACTTGATGAGACAGTTGTGTTGAATAGTCCCAGGGATGCTGTTTTAAATTTAATTAGGAAGGCAAATCCTACTATCTTTATTCATACTACTGTCAATGGGAGCTACAATGCCCCATTCTTTGTGACACGGTTTCGGGAGGCTCTTTTCCATTACTCCACATTGTTTGATGTGCTTGACACCAATGTTACTCGTGAAGATCCAATGAGGTTGATGTTTGAAAAAGAGTTCTTTGGGCGGGAGGTAATGAATATTATAGCTTGTGAGGGTTCTGAGAGGGTTGAGAGGCCTGAGACATACAAGCAATGGCAGGTTCGGAACATGAGGGCTGGATTTAGGCAACTTCCCTTGGATCAACATCTCATTAACAAATTGAGATGCAAATTGAAAGATGTGTACCACAGTGATTTCATGCTTGTTGAAGATGGCAACAGCATGCTGCAGGGTTGGAAGGGCCGAATAGTTTATGCTTCCTCTTGTTGGGTACCTGCATAG 2031 0.4382 MDNPFLLPPDPNNAQNPSSLSTITTEEDSPLDEIDFSATVLRYINQMLMEEDMEKKSCMFHDSLALQAAEKSFYEVIGETYPSSSIQNYHNVESPDGSLSSNFSGYSGTTSTSNSETTFPADFVFQATSTSSSQSSMNSTSNFTVTNSGFLASSSAGFSDSTLLSKNESVLQFERGMEEASKFLPKGNPLIIDLENSSFIPSIRKVPQQVEIKTERDSRGRKNHEREDETDLQDERSNKQSAVYRDDSEELSELFDKVLLGTGKEDQPNGPDMSVQQKEETNKSGGGKSRVKKQGNKKGVVDLRTLLILCAQAVSSDDRATANELLKQIRQHSSPLGDGSQRLAHCFANALGARLAGTGTQIYTALSSKRTSAADMVKAYQMYISACPFKKLAIIFANHTILNLAKEVETLHIVDFGIRYGFQWPALIFRLSKRPGGPPKLRITGIELPQPGFRPAERVQETGLRLARYCERFNVPFEFNAIAQKWETIKFEDLKIKKNELLAVHCMCRFKHLLDETVVLNSPRDAVLNLIRKANPTIFIHTTVNGSYNAPFFVTRFREALFHYSTLFDVLDTNVTREDPMRLMFEKEFFGREVMNIIACEGSERVERPETYKQWQVRNMRAGFRQLPLDQHLINKLRCKLKDVYHSDFMLVEDGNSMLQGWKGRIVYASSCWVPA. 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03642 676 MobiDBLite consensus disorder prediction 261 295 - -
Seca3g03642 676 Pfam GRAS domain family 303 673 IPR005202 -
Seca3g03642 676 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 218 667 IPR005202 -
Seca3g03642 676 MobiDBLite consensus disorder prediction 210 249 - -
Seca3g03642 676 MobiDBLite consensus disorder prediction 1 28 - -
Seca3g03642 676 ProSiteProfiles GRAS family profile. 294 674 IPR005202 -
Seca3g03642 676 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03642 Seca-Chr3 65701974 65704115 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03642 40 676 GRAS Transcription Factor Family AT1G07530 56.936 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca3g03642 GRAS 4.5e-117 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03642 - - gmx:100815586 1063.52