Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03638 ATGGATCCGTATCTGGAAGACACTGACTTCTCAGAAACTGTCAAATTCATAAGCCAAACCCTGATGGAAGAGAACATTGAACAGAGGCCCTTTTATGACTTGCTCAGCTTGCAAGTCACTGAGAAATCACTTTATGAAGCTCTCAAAGATCAACACCCCTCAGATATTCAGAGCCCGGACGGTGGAACCATCAGCGGCAACAGCAGCAGCTGCAGCTTCAACAACTTTTTACATGACAATTCTTGTGGATTGACTCCTCCTTCTCGGGATACCCCTGTTTCTGTTCTTGGTGATCATCCTAGCAATGGAATGTTAGATTTGGATTCTTCTGTTTCCAAACTGTTGGCACAAAATGTCATCAGTGACACAGACTCTGTCTCCCAGTTTATGAGAGGCTTAGAGGAAGCTAGCAAGTTTCTCCCTCCAGGACCTCAGCTTGTGACTGGTCTTGAGTCAAAGGAAGAAGCACCTGTTATGGTTGGGGAGAATCCATTTGGGTTGAAAGGTAGAAAGAATCATGAGTTTATAAAGAATCATCGGCGTGAAGAAAGTGATACCAGTGAAGTAGGGAGAAGTAACAAACAATCAGCAGTTGGTGTTGTTGACGAGGATGACTTATCAGATATGTTTGATCGATTGATGCTTAGTGTGGAAAGTGTGCCAGGTAAAAAGCCACCTTCATCTGATGGAGAGAAGGCTCATCCTAAGAGAAAAGGCGGGAAGAAGGAAACAGTAGATTTGAGGGATCTTCTGTTTCTATGTTCACGAGCTCTGCATGCCAGTGACAACTGGACTGCTAATGAACTACTACAGCAGATTAGGCAGCGTTCCTCTCCCTTTGGGGATGGATCACAGAGGTTGGCTCATTACTTCGCCAATGGCCTTGAGGCACGCTTGGTTGGTGATAGTACCTGCACACAAGTATATTATTCCTCTCCGAGCCCCAAAAGGATCACTGCTTCTGAGTTTTTGAAAGGTTACCAAGTTACTCTATCTACTTGCCCATACAAGCAGTTTGCATTTTTATTTGCAAATAAAATGATTATGAAAGTAGCTGAAAAGGCAGAAACCATTCATATTATCGATTTTGGTATCGTGTATGGTTTCCAATGGCCATTACTTATTAAGTTTTTGTCAAATAGAGATGGTGGACCACCCAAGCTGAGGATCACAGGGATAGAGTTTCCCCAGCCTGGCTTTCGTCCAACAGAATTAGTTGCGGAGACTGGTCACCGTCTGGCTGACTATTGCAAGCGTTTCAATGTTCCCTTTGAGTACCATGCCATAGCATCACAGAACTGGGAATCCATTCAAGTTGAAGACCTTAAAATTAAGAGCAACGAGCTAGTTGCTGTGAACTGTATGATGAGGTTCAGGAATTTACTGGATGAGACTATTGAAGGGAACAGTCCAAGAGACGCAGTTCTGCATTTGATCAGGAAGCTAAATCCGGATATTTTTACTCAGTCCATCTACAATGGATCTTATAATTCCCCTTTCTTTGCCACACGGTTTAGGGAGGCTCTGTTCCATTATTCTGCTTTTTATGATATGTGTGACACTGTCATGCCCAGGGAAGACGAATGGAGGATGGTGTATGAGAGAGAGATTGTGGGTCGGGAGGCTATGAATGTTATAGCATGTGAAGGCTTCGAGAGGGTTGAGAGGCCTGAGACATACAAACAGTGGCAGGTTAGGAATTCAAGGGCTGGTTTCAAGCAGCTCCCGCCGAACCAGGATTTAATGGCCAACTTTAGGACTAAGTTAAGAGAATACCACAGAGATTTTGTCCTTGATGAAGACAATAACTGGATGCTTCAAGGGTGGAAGGGCCGCATTTTCTATGCTTCCACTTGTTGGGTCCCGGCATAA 1872 0.4418 MDPYLEDTDFSETVKFISQTLMEENIEQRPFYDLLSLQVTEKSLYEALKDQHPSDIQSPDGGTISGNSSSCSFNNFLHDNSCGLTPPSRDTPVSVLGDHPSNGMLDLDSSVSKLLAQNVISDTDSVSQFMRGLEEASKFLPPGPQLVTGLESKEEAPVMVGENPFGLKGRKNHEFIKNHRREESDTSEVGRSNKQSAVGVVDEDDLSDMFDRLMLSVESVPGKKPPSSDGEKAHPKRKGGKKETVDLRDLLFLCSRALHASDNWTANELLQQIRQRSSPFGDGSQRLAHYFANGLEARLVGDSTCTQVYYSSPSPKRITASEFLKGYQVTLSTCPYKQFAFLFANKMIMKVAEKAETIHIIDFGIVYGFQWPLLIKFLSNRDGGPPKLRITGIEFPQPGFRPTELVAETGHRLADYCKRFNVPFEYHAIASQNWESIQVEDLKIKSNELVAVNCMMRFRNLLDETIEGNSPRDAVLHLIRKLNPDIFTQSIYNGSYNSPFFATRFREALFHYSAFYDMCDTVMPREDEWRMVYEREIVGREAMNVIACEGFERVERPETYKQWQVRNSRAGFKQLPPNQDLMANFRTKLREYHRDFVLDEDNNWMLQGWKGRIFYASTCWVPA. 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03638 623 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 185 611 IPR005202 -
Seca3g03638 623 Pfam GRAS domain family 247 620 IPR005202 -
Seca3g03638 623 MobiDBLite consensus disorder prediction 225 242 - -
Seca3g03638 623 MobiDBLite consensus disorder prediction 217 242 - -
Seca3g03638 623 MobiDBLite consensus disorder prediction 178 201 - -
Seca3g03638 623 ProSiteProfiles GRAS family profile. 238 621 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03638 Seca-Chr3 65654059 65655951 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03638 13 623 GRAS Transcription Factor Family AT1G07530 47.550 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca3g03638 GRAS 4.1e-111 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03638 - - tpra:123918580 836.639