LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g03635	ATGGCTGATCCTTCTCTGGAAGACACTGACTTCTTAGAAACTGTCAAGTTCATAAGCCAAACCCTCATGGAAGAGAACATTGAACAGAGGCCCTTTTATGACCCAGTGACCTTGCAACTCACAGAGAAGTCATTTTACGATGCCCTCAAAGACAACGTCCCTCTTTCCCCTGGTCAACATCCCTCAGATAGTCAGAGCCCCGATGGAACCACCAGCAGCAGTGGCAGTAGCAGCAGTGCCAACAACTTTTTACATGAAAATTCTAGTGAGTTGACTCCCTCTTCTCAGGATACCCCTGTTTCTGTCCTTGGCGATCATGCTTTTCAGCTTAACTCCCATTTTCCTTTAGATTTGGATTCTTCTGTTTCCAAACTGTTGGCACAAAATGTTATCAGTGATACAGACTCCGTCTCCCAGTTTATGAGAGGCTTAGAGGAAGCTAGCAAGTTTCTTCCTCTAGGGCCTCAGTTTGTGACTGGTCTTGAGTCAAAGGAAGAAGCACCCATTATGGTTGGGGAGAATTCGTTTGGGTTTAAAGGTAGAAAGAATAATGAGGGCAGAAAGAATCATGAGCGCGAAGAAAGTGATGCCACTGAAGTAGGTAGAAGTAACAAGCAATCAGCAGTTGGTGATGCTGATGAGGATGACTTATCAGATATGTTTGATCGACTGATGGTTAGTGTGGAAAGTGAGCCAGGTGAAAAGCCACCTTCGTCTGATGGATGGAAGGATCATCCTAAGAGAAAAGGCAGGAAGAAGGGAGCAGTAGATTTGAGGAATCTTCTGCTTCTATGTTCACAAGCTCTGCATGCCAATGACAACAGGGCTGCTAATGAACTACTACTGCAGATTAGGCAGCATTCTTCTCCCTCTGGGGATGGATTACAGAGGTTGGCTCATTACCTCGCCAATGGCCTTGAGGCCCGTTTGGTTGGTGATGCTGATGGTACCCGTGCACAAGTATATTATACCTCTCCGAGCATCAAGAGCATCACAAATGTTGAGTTTCTGAAAGGCTACGAAATTTTTCTATCTACTTGCCCATACAAGAAGTTTGCATTTTTATTTGCAAATAAAATGATTATGAAAGTAGCTGCAAAGGCAGAAACCCTTCATATTATTGATTTTGGTATCCTATATGGTTTCCAGTGGCCATTACTTATTAAGTTTCTATCAAATAGAGATGGTGGACCTCCCAAGCTGAGAATTACAGGTATAGAGGTTCCCCAACCTGGCTTTCGTCCAACAGAAATAATTGAGGACACTGGTCGTCGTCTGGCTGACTATTGCAAGCGTTTCAATGTTCCCTTTGAGTACAATCCTATAGCATCACGGAACTGGGAAACCATTCAAATTGAAGACCTGAAAATTGAGAGCAATGAGCTAGTTGTTGTGAACTGTATGATGAGGTTCAAGAATTTACTGGATGAAACTATTGAAGGGAACAGTCCTAGAAATGCGGTTCTGCATTTGATTAGGAAAATAAATCCAACTATTTTTACTCATGCCATCTATGCTGGATCTTATAATTCCCCTTTCTTTGCCACACGGTTTAGGGAGGCTCTGTTCCATTATTCTGCTTTTTATGATATGTGTGACACCGTCATGCCCCGGGAAGACACATCAAGGATGATGATTGAGAGAGACATTGTGGGTCGGGAGGCTATGAATGTTATAGCATGTGAAGGTTCCCAGAGGGTTGAGAGGCCTGAGACATACAAACAGTGGCAGGTTAGGAATACGAGGGCTGGTTTCAAGCAGCTCCCACTGGACCAGGAATTAATGGCCAACTTTAGGACTAAGTTAAGGGAATGGGGCCAGAGAGATTTTATCCTTGATGAAGATGATAACTGGATGCTTCAAGGTTGGAAGGGTCGCATTTTGTATGCTTCCAGTTGTTGGGTGCCAGCATGA	1914	0.4383	MADPSLEDTDFLETVKFISQTLMEENIEQRPFYDPVTLQLTEKSFYDALKDNVPLSPGQHPSDSQSPDGTTSSSGSSSSANNFLHENSSELTPSSQDTPVSVLGDHAFQLNSHFPLDLDSSVSKLLAQNVISDTDSVSQFMRGLEEASKFLPLGPQFVTGLESKEEAPIMVGENSFGFKGRKNNEGRKNHEREESDATEVGRSNKQSAVGDADEDDLSDMFDRLMVSVESEPGEKPPSSDGWKDHPKRKGRKKGAVDLRNLLLLCSQALHANDNRAANELLLQIRQHSSPSGDGLQRLAHYLANGLEARLVGDADGTRAQVYYTSPSIKSITNVEFLKGYEIFLSTCPYKKFAFLFANKMIMKVAAKAETLHIIDFGILYGFQWPLLIKFLSNRDGGPPKLRITGIEVPQPGFRPTEIIEDTGRRLADYCKRFNVPFEYNPIASRNWETIQIEDLKIESNELVVVNCMMRFKNLLDETIEGNSPRNAVLHLIRKINPTIFTHAIYAGSYNSPFFATRFREALFHYSAFYDMCDTVMPREDTSRMMIERDIVGREAMNVIACEGSQRVERPETYKQWQVRNTRAGFKQLPLDQELMANFRTKLREWGQRDFILDEDDNWMLQGWKGRILYASSCWVPA.	638

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g03635	637	PANTHER	OSJNBA0084A10.13 PROTEIN-RELATED	187	630	IPR005202	-
	Seca3g03635	637	MobiDBLite	consensus disorder prediction	50	100	-	-
	Seca3g03635	637	MobiDBLite	consensus disorder prediction	180	200	-	-
	Seca3g03635	637	Pfam	GRAS domain family	258	634	IPR005202	-
	Seca3g03635	637	MobiDBLite	consensus disorder prediction	174	216	-	-
	Seca3g03635	637	ProSiteProfiles	GRAS family profile.	249	635	IPR005202	-
	Seca3g03635	637	MobiDBLite	consensus disorder prediction	228	250	-	-
	Seca3g03635	637	MobiDBLite	consensus disorder prediction	57	100	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g03635	Seca-Chr3	65596943	65598880	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g03635	14	637	GRAS Transcription Factor Family	AT1G07530	46.753	0.0	569

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GRAS	Seca3g03635		GRAS	2.5e-111	CL0063

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g03635	-		-	gmx:100795855	813.527