LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g03633	ATGGATCCTAACATTCCAGCAGCTAACGATTCCAAGAACATGTACCAGTTTGGTGAAGAAGGAAACATTCTAGTCTCGGATCCAAATCAGTACTCAACAGACTGGTATATGTACCAACAATATGGGAGCCTCCTTGATGTGGACCCAATTGGTATTGCTGTGCATACAAACCCTATAGAGGGTCAAGCCGCCTCTGTGGCAACCATGTCCTTGACCTCGGTGATGGATCCTTCTCTGGAAGAAGACACGGACTTCTCAGAAACTGTCAAGTTCATGAGCCAAATCCTGATGGATGAGAACTTTGAACAGATGCCGTTTGATGATTCACTGAGTTTACAAGTCACTGAAAAATCATTCTATGATGCTCTCGTAGACAACATACATCTTTCCCCCATTCAACACCCCTTAGATATTTCCAGCTCCAACAGTGGATCCACCAGCAGTGCCAATGTCTCACATGACAACTTTCAGGAGTTGAATCCCCCTTCTCCTGATACTCATGTTTCTGCTTTTCAGTTTAACTCCCATGCCATTTCTCACACTCCCTCTCAACCTCCTTCCACTAGTGTTAGTGACAGACTATTAGATTTGGATTCTTCTGTTACCAAACTGTTAGCACAAAATATTTTCAGTGATGCAGATTATGTCTCCCAATTCAAGAGAGGGTTGGAGGAAGCTAGCAAGTTTCTTCCTCAAGAACCTTGGCTTGTGGCTGGTCTAGAGTCAGAGGGAGAATCATCCAATATGGTTGGGGAGAATTCGTTTAGGTTGAAAGGTAGAAAGAATCATCAGCGTGAAGAAAGTGATACAAATGAAGAAGGGAGAAGTAACAAGCAATCAGCAGTAGGCGTTGTTGGTGAGGGTGATTTATCAGATATGTTTGATCAAGTCTTGCTTAGTGTGGAACTTTTGTCACTGTATAGTGAACCCGATTGCTTGCAGAATGAACCAGTTAAAGCAAAGCAGCCAGGTGAAAAGCCACCTTCATCAGATATGAGGACTGCTAATGAAACAGTAGATATGAGGACTCTTCTGCTTCTATGTTCTCAAGCTGTGTATGCCAATGATAACAGGACTGCTAATGAACTACTAATACAGATTAGACAGCATTCTTCTCCCTCTGGGGATGCATCACAGAGGTTGGCTCATTACTTTGCCAATGGCCTTCAGGCACGCTTGGTTGGCGATAGTTCTGGGGCGCAAGTATTCTTTTCCTCTCCAATCTCCAAGAGGTTCACTGCTGCTGATTTTGTGAAAGCTTACAAAGTTCTCCCAACTGGTATCCCATTCAATAAGTTTGTATATTCCTTTGCAAATACAATGATTATGAAAGCAGCTGCAAAGGCAGAAACCCTTCATATCATTGATTTTGGTATCCTATATGGTTTCCATTGGCCAGTACTTATTAAGTTTCTATCAAATAGAGACGGTGGACCTCACAAGCTAAGGATCACAGGGATAGATTTTCCCCTACCTGGCTTTCGTCCTACAGAAAGAATTGAGGAGACTGGTCGTCGTCTGGCTAACTATTGCAAGCGTTTCAATGTTCCCTTTGAGTACAATTTCATAGCATCAGGGAACTGGGAAACCATTCAAGTTGAAGACCTTAAAATTGAGAGCAATGAGGTAGTTGCTGTGAACTGTCTGGTGAGGTTCAAGAATTTACTGGATGAGTCCATTGAGGTGAATTGTCCTAGAAATACAGTTCTGCATTTGATCAGGAAGATAAATCCGGATATTTTTGTTCAGTCCATTGATAATGGATGTTATAATATCCCTTTCTTTGTCACGCGGTTTAGGGAGGCTCTGTTCCATTTTTCTGCTTTTTATGATATGTTTGACACTGTCATGCCCCGTGAAAATGAATGGAGGATGATAATTGAGAGAGAGATTTTGGGTCGGGAGGTTATGAATGTATTAGCATGTGAAGGTTTCGAGAGGATTGAGAGGCCTGAGACATACAAACAGTGGCAGGTTAGGAATACTAGGGCTTGTTTCAAGCAGCTCCCTCTGAACCAGGAATTGATGGCTAATTTTAGGACTAAGCTAAGGGAAAGGTACCACAGAGATTTTGTCTGTGATGAAGACAACAACTGGATGCTTCAAGGTTGGAAGGGCCGCATATTGTATGCTTCCACTTGTTGGGTGCCGGCATAA	2157	0.4265	MDPNIPAANDSKNMYQFGEEGNILVSDPNQYSTDWYMYQQYGSLLDVDPIGIAVHTNPIEGQAASVATMSLTSVMDPSLEEDTDFSETVKFMSQILMDENFEQMPFDDSLSLQVTEKSFYDALVDNIHLSPIQHPLDISSSNSGSTSSANVSHDNFQELNPPSPDTHVSAFQFNSHAISHTPSQPPSTSVSDRLLDLDSSVTKLLAQNIFSDADYVSQFKRGLEEASKFLPQEPWLVAGLESEGESSNMVGENSFRLKGRKNHQREESDTNEEGRSNKQSAVGVVGEGDLSDMFDQVLLSVELLSLYSEPDCLQNEPVKAKQPGEKPPSSDMRTANETVDMRTLLLLCSQAVYANDNRTANELLIQIRQHSSPSGDASQRLAHYFANGLQARLVGDSSGAQVFFSSPISKRFTAADFVKAYKVLPTGIPFNKFVYSFANTMIMKAAAKAETLHIIDFGILYGFHWPVLIKFLSNRDGGPHKLRITGIDFPLPGFRPTERIEETGRRLANYCKRFNVPFEYNFIASGNWETIQVEDLKIESNEVVAVNCLVRFKNLLDESIEVNCPRNTVLHLIRKINPDIFVQSIDNGCYNIPFFVTRFREALFHFSAFYDMFDTVMPRENEWRMIIEREILGREVMNVLACEGFERIERPETYKQWQVRNTRACFKQLPLNQELMANFRTKLRERYHRDFVCDEDNNWMLQGWKGRILYASTCWVPA.	719

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g03633	718	Pfam	GRAS domain family	342	715	IPR005202	-
	Seca3g03633	718	MobiDBLite	consensus disorder prediction	241	281	-	-
	Seca3g03633	718	MobiDBLite	consensus disorder prediction	256	274	-	-
	Seca3g03633	718	ProSiteProfiles	GRAS family profile.	332	716	IPR005202	-
	Seca3g03633	718	PANTHER	OSJNBA0084A10.13 PROTEIN-RELATED	284	711	IPR005202	-
	Seca3g03633	718	MobiDBLite	consensus disorder prediction	138	169	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g03633	Seca-Chr3	65570233	65572389	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g03633	88	718	GRAS Transcription Factor Family	AT1G07530	46.475	0.0	558

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GRAS	Seca3g03633		GRAS	1e-105	CL0063

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g03633	-		-	lja:Lj0g3v0300259.1	865.144