Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03631 ATGGATCCTAACTTTCCAGCACCTAACGATTCCATGAACACCTACGGGTTTGGTGAAGAAGGGAGCATACTAGTCTCAGATCCAAATCAGTACTCAACAGACTGGGATATGTACCAACAATATGGGAGCCTCCTTGATGTGGACCCAATTGGTTTTGCTGTGCATACAAGCCCTATAGAGGGTCAAGGTGCGTCTGGGGCAACCATGTCCATGACCTCAGTGATGGATCCTTCTCTGGAAGACACTGACTTCTCAGAAACTGTCAAGTTCATGAGCCAAATCCTGATGGATGAGAACTTTGAACCGAGGCTGTTTGATGATTCACTGAGCTTACAAGTCATGGAGAAATCATTTTGTGATGCTCTCGTAGACAACATACATCTTTCCCCCATTCAACACCCCTTGGATATTCAGAGCTCCAATGGTGGAACCACCAGCAGTGCCTATGTTTTACATGACAATTTTCAGGTTTTGAAGCCCCCTTCTCCTGATACTCATGTTCCTGCTCTTCATGATCATGCTTTTCAGTTTAACCCCCACAGACTATTAGATTTGGATTCTTCTGTTACCAAACTGTTAGCACAAAATATTTTCAGTAATGCAGATTATATCTCCCAATTCAAGAGAGGGTTGGAGGAAGCTAGTAAGTTTCTTCCTCCTGGACCTAGGCTTGTGACTGGTCTAGAGTCTGAGGGAGAATCATCCAATATGGTTGGGGAGAATTCGTTTGGGTTGAAGGGTAAAAAGAATCATCAGCGCGAAGAAAGTGATACTAAGGAAGGAGGGAGAAGTAACAAGCAATCAGCAGTAGGCATTGTAGATGAGGGTGATTTATCAGATATGTTTGATCAAATTTTGCTTAGTGTGGAACATCTGTCACTGTATAGTGAACACGATTGTTTGCAGAATGAACCAGTGAAAGCAGAGCATCCACGTGAAAAGCCACCTTCATCTGATGGAAGGAAGGCCCGTCATAAGAAACACGGCCGGAAGGAGGAAACAGTAGATTTGAGGACTCTTCTGCTTCTATGTTCACAAGCTGTGTATACCAGTGACAACAGGACTGCTAATGAAATACTAAAGCAGATCAGGCAGCATTCTTCTCCCTTTGGGGATGCATCACAGAGGTTGGCTCATTACTTCGCCAATGGCCTGGAGGCACGCTTGGCTGGTGATAGTTCTGGTGCACAAATATTTTATTCCTCTCTGAGCTCTAGGAGGATCACTGCTGCTGAGTTTGTGAAAGCTTACCATGTTTTTCCATCTGCTGCCTCGTTCAAGAAGTTTGCATATTCCTTTGCAAATACAATGATTATGAAAGCAGCTGTAAAGGCAGAAACCCTTCATATTATTGATTTTGGTATCCTATATGGTTTCCAGTGGCCAATACTTATTAAGTTTCTATCAAATAGAGATGGTGGACCTCACAAGCTGAGGATCACAGGGATAGAATTCCCCCAACCTGGCTTTCGTCCCACAGAGAGAATTGAGGAGACTGGTCGTCGTCTGGCTAACTATTGCAAGCGTTTCAATGTTCCCTTTGAGTACAATCCTATAGCATCACGGAACTGGGAAACCATTCAAGTTGAAGACCTTAAAATTAAAATCAAGGAGCTAGTTGCTGTGAACTGTGTGATGAGGTTCAAGAATTTACTGGATGAGACCATTGAAGTGAATAGTCCTAGAGATACAGTTCTGCATTTGATCAGGAAGATAAATCCAGATATTTTTGTTCAGTGCATCGATAATGGATCTTACAATATCCCTTTCTTTGTCCCACGATTTAGGGAGGCTCTGTTCCATTTTTCTGCTTTTTATGATATGTTTGACACTGTCATGCCCCGTGAAAACGAATGGAGGATGATAATTGAGAGAGAGATTTTGGGTCGGGAGGCTATGAATGTTATAGCATGTGAAGGTTTTGAGAGGGTTGAGAGGCCTGAGACATACAAACAGTGGCAGGTTAGGAATACTAGAGCTGGTTTCAAGCAGCTACCACTGAACCAGGAATTAATGGCCAATTTGAGGACTAAGTTAAGGGAAAGGTACCACAGAGATTTTGTCCTTGATGAAGACAACAACTGGATGCTTCAAGGTTGGAAGGGCCGCATTTTGTATGCTTCCACTTGTTGGGTGCCGGCATAA 2145 0.4326 MDPNFPAPNDSMNTYGFGEEGSILVSDPNQYSTDWDMYQQYGSLLDVDPIGFAVHTSPIEGQGASGATMSMTSVMDPSLEDTDFSETVKFMSQILMDENFEPRLFDDSLSLQVMEKSFCDALVDNIHLSPIQHPLDIQSSNGGTTSSAYVLHDNFQVLKPPSPDTHVPALHDHAFQFNPHRLLDLDSSVTKLLAQNIFSNADYISQFKRGLEEASKFLPPGPRLVTGLESEGESSNMVGENSFGLKGKKNHQREESDTKEGGRSNKQSAVGIVDEGDLSDMFDQILLSVEHLSLYSEHDCLQNEPVKAEHPREKPPSSDGRKARHKKHGRKEETVDLRTLLLLCSQAVYTSDNRTANEILKQIRQHSSPFGDASQRLAHYFANGLEARLAGDSSGAQIFYSSLSSRRITAAEFVKAYHVFPSAASFKKFAYSFANTMIMKAAVKAETLHIIDFGILYGFQWPILIKFLSNRDGGPHKLRITGIEFPQPGFRPTERIEETGRRLANYCKRFNVPFEYNPIASRNWETIQVEDLKIKIKELVAVNCVMRFKNLLDETIEVNSPRDTVLHLIRKINPDIFVQCIDNGSYNIPFFVPRFREALFHFSAFYDMFDTVMPRENEWRMIIEREILGREAMNVIACEGFERVERPETYKQWQVRNTRAGFKQLPLNQELMANLRTKLRERYHRDFVLDEDNNWMLQGWKGRILYASTCWVPA. 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03631 714 MobiDBLite consensus disorder prediction 246 262 - -
Seca3g03631 714 MobiDBLite consensus disorder prediction 304 332 - -
Seca3g03631 714 Pfam GRAS domain family 337 711 IPR005202 -
Seca3g03631 714 ProSiteProfiles GRAS family profile. 328 712 IPR005202 -
Seca3g03631 714 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 285 707 IPR005202 -
Seca3g03631 714 MobiDBLite consensus disorder prediction 304 320 - -
Seca3g03631 714 MobiDBLite consensus disorder prediction 226 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03631 Seca-Chr3 65557750 65559942 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03631 87 714 GRAS Transcription Factor Family AT1G07530 46.915 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca3g03631 GRAS 1.2e-111 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03631 - - lja:Lj0g3v0300259.1 910.212