Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03622 ATGAATTTTGTTTTCCGAGGAAGTAGGGGGGATATTGAAAGCGGATTTCCAGAATATGTTGCTGAAAGAACCTCAGTGCGGGTTCATCCATCTCGGCCAGTTAATAGCAATTCTCTAGCTTTTCTTATTACAGTTATATTGATATTCATGATTTTAAACTCTCCTCAGATGTTACATTACTTTTTGAAGGTAGCTGTTGACACCTCCTTTCAGCTCTGGGCTGTACTGGCTGTCTTTGTGATGGCTACAAGTCTGAGGATGTATGCAACTTGTCAACACCTTCAAGAACAGGCCAGGGCTCATGCTGCAGCAGCCTCTGGGTATTATGCTTCTGCAGTTCACTTTCAGACCTGTATTTTGGTATCTTTTTTAAGTTGGAAATGCCTAAAATGGACACCAAAAGCAGATTATGACACTTTGAGAGCTCTGGACTCTGATACTGCTTCTAGTACTCATTCAATGACTGAGGAAGAGATAAATGCCTTGCCTATTCACACACATAAAGTTCCAGTCCCAACAAAAGATGGCTCAGCTGGTTTGGCATCCTCTTCTTCAAGTGCAGCTGAGATTAAACATGGCTCCGGAGGAACAGATGGTAGTATCAAAGGTCCAGATGATGAGCTGACATGTACTATATGCTTGGAGCAAGTTAAGAGGGGGGAGCTTGTACGTAGCTTGCCATGCTTGCATCAGTTTCATGCCAACTGCATCGATCCATGGCTCCGGCGACAAAGAACATGTCCTGTTTGCAAATTTAGGATGGGGTCAGGAAGGCATGGAAACAGGGAGAGCGAGTCCGATGGTTCAGATTCTGTGTAG 819 0.4408 MNFVFRGSRGDIESGFPEYVAERTSVRVHPSRPVNSNSLAFLITVILIFMILNSPQMLHYFLKVAVDTSFQLWAVLAVFVMATSLRMYATCQHLQEQARAHAAAASGYYASAVHFQTCILVSFLSWKCLKWTPKADYDTLRALDSDTASSTHSMTEEEINALPIHTHKVPVPTKDGSAGLASSSSSAAEIKHGSGGTDGSIKGPDDELTCTICLEQVKRGELVRSLPCLHQFHANCIDPWLRRQRTCPVCKFRMGSGRHGNRESESDGSDSV. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03622 272 MobiDBLite consensus disorder prediction 173 201 - -
Seca3g03622 272 CDD RING-H2_PA-TM-RING 209 251 - -
Seca3g03622 272 SUPERFAMILY RING/U-box 206 254 - -
Seca3g03622 272 ProSiteProfiles Zinc finger RING-type profile. 210 251 IPR001841 -
Seca3g03622 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 258 IPR013083 -
Seca3g03622 272 PANTHER TARGET OF ERK KINASE MPK-1 2 256 - -
Seca3g03622 272 MobiDBLite consensus disorder prediction 177 191 - -
Seca3g03622 272 Pfam Ring finger domain 209 251 IPR001841 -
Seca3g03622 272 SMART ring_2 210 250 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03622 Seca-Chr3 65415751 65419680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03622 1 272 C3H Transcription Factor Family AT3G55530 54.737 5.33e-86 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03622 K16283 - gmx:100805406 354.369