Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03621 ATGAATTCGGATACGCAACCCGGAACGGCGTCGTACTGGTGCTACAGCTGCACCCGCTTTGTTCACATCTTGGGTCACGGTAACATCGTGTGCCCTAACTGTGAAAGCGGCTTCGTTGAACAGATCCACGCCGACCAATCACCGCGCCACCGTCATAGTCCCTTCCCCGACGACCTCATCTCTTCGAGGAGGCAAGGAATTCGCCGGAGACGCCGCGATACTGGCAGCCGCTCCCCTTTCAACCCTGTCATCGTTCTCCGTGGACCCGGGGAAGACGGAGCCGATCACGACGGAGGGAGTGCCTTCGAGTTGTACTACGACGACGGTGATGGCTCTGGCCTCCGCCCCCTGCCGCCGACTGTGTCGGAGTTTCTCCTGGGGTCGGGATTCGATCGGTTGCTGGAGCAGTTTGCGCAGATCGAGATGAACGGCGGTTTCGGCCGGCCGGAGAACCCGCCAGCGTCGAAGGCGGCGATCGAGTCGATGCCGACGGTTGAGATCGGCGAGGCGCAGGTGGGTACAGAAGCGCACTGTGCGGTTTGCAAAGATGCGTTTGAGCTTGGCACGGAGGCGCGTGAGTTACCCTGCAAGCACATTTACCATTCCGATTGCATTCTTCCATGGCTTTCGATGCGGAACTCGTGCCCCGTGTGCCGCCATGAGCTTCCTTCGGATCAGAACCCTATGGAGAGCAGGGTATCGGGTCAAATCGATGAAGAAGCGATCGGGTTAACGATATGGAGGTTGCCTGGTGGGGGATTCGCTGTCGGGAGGTTTGCCGGTGGCCGGAGAGCCGGAGAGAGTCATTTTCCGGTTGTGTACACAGAGATGGACGGTGGGCTTAATGCAAACGGAGCTCCCAGAAGAATTTCTCGGTCGGTGAGAAGCCACAGGGTTAGGGAAAGTCGTGGATTTGGCAGAGTTTTTCGCAATTTCTTGTCATTCTTTGGAAGACTTGGTTCTAGGTCCACTTCTTCTTCCTCCTCCTCCTCCTCTTTGTCATCTTCGTATTCTGGTTCTGAGAATGTGTCGGTGAGTAGAAGCCGTAGCCAAGTGAATTCATTGTTCAATAGAAACTCGCGGAGACGAAGCAGGGCTTGGTTCTTGGAAGATTGA 1116 0.5636 MNSDTQPGTASYWCYSCTRFVHILGHGNIVCPNCESGFVEQIHADQSPRHRHSPFPDDLISSRRQGIRRRRRDTGSRSPFNPVIVLRGPGEDGADHDGGSAFELYYDDGDGSGLRPLPPTVSEFLLGSGFDRLLEQFAQIEMNGGFGRPENPPASKAAIESMPTVEIGEAQVGTEAHCAVCKDAFELGTEARELPCKHIYHSDCILPWLSMRNSCPVCRHELPSDQNPMESRVSGQIDEEAIGLTIWRLPGGGFAVGRFAGGRRAGESHFPVVYTEMDGGLNANGAPRRISRSVRSHRVRESRGFGRVFRNFLSFFGRLGSRSTSSSSSSSSLSSSYSGSENVSVSRSRSQVNSLFNRNSRRRSRAWFLED. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03621 371 MobiDBLite consensus disorder prediction 45 93 - -
Seca3g03621 371 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Seca3g03621 371 Pfam Protein of unknown function (DUF1117) 242 359 IPR010543 -
Seca3g03621 371 MobiDBLite consensus disorder prediction 45 64 - -
Seca3g03621 371 SMART ring_2 178 218 IPR001841 -
Seca3g03621 371 SUPERFAMILY RING/U-box 158 225 - -
Seca3g03621 371 FunFam E3 ubiquitin-protein ligase RING1-like 140 225 - -
Seca3g03621 371 Pfam Ring finger domain 177 219 IPR001841 -
Seca3g03621 371 CDD RING-H2_RNF126-like 178 219 - -
Seca3g03621 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 59 223 - -
Seca3g03621 371 MobiDBLite consensus disorder prediction 320 341 - -
Seca3g03621 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 225 IPR013083 -
Seca3g03621 371 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03621 Seca-Chr3 65403794 65404909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03621 116 230 C3H Transcription Factor Family AT5G01980 45.217 1.79e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03621 K11982 - gmx:100792874 495.352