Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03620 ATGGGGGAAGAAGTTAAGCCAGATGAAGAGCGTGTCACCGACTGGGAGAAGGGTCTCCCAAGCACACACGATCTCACTCCCCTCTCTCAGCCTTTGATCCCACCGGAGCTAGCATCGGCCTTCAGCATCTCGCCGGAGCCCCGCCGCACACTCCTCGACGTCAACCGCGCCTCCAGGAACACCCTCTCCATTCTTCGTGGCGGTGGAAACGCTCACCAGGCGTTCTCCTCCTCCAACAACAACAACCACAACAACCTCGACGACGACGAGGACGAGGAGGGCGAAGAGGACATCGATCGGGACGGGTCGGGTTCCGATTCCCGGAAACAGAGGAAGATCGATTGTACGGAGGAAGCCGATTCGGCGGTTCGGACGGAGACGACCCTGAAACGACCTCGTTTGGTGTGGACCCCGCAGCTACACAAGCGGTTCGTGGACGTTGTGGCGCACCTTGGGATCAAGAACGCGGTGCCGAAAACGATTATGCAGTTGATGAACGTGGAAGGGTTGACCCGTGAGAACGTGGCGAGTCACCTTCAGAAGTATCGTCTTTACTTGAAGAGGATGCAAGGTCTCTCCAACGAAGGTCCTTCTTCCTCTGATCATCTTTTTGCTTCCACCCCTGTCCCTCAAAGTTTGCATGACTCTCCTGCTGCTGCTGCTGCTGCTTCTCATTCCCATTCCCATTCCCAATCCCATGGCCATACCAATTCCCATCTTCCCGTTCACATTCCCATGCCTTATCCTCCACATCCTATGATGTCCATGCCCCTCCTTGGCATGCCACACCCCCATGGCCATATGGGTATGCCCCTCGCTTCTTCCTCTGCTACCTCCTCTTATCACTCTCATCCCTTTAACATGTTGCACCAGAGAGATTGGCCTCACCCTCCTCACCTTGCTCCTAATGATAATAAATGA 921 0.5527 MGEEVKPDEERVTDWEKGLPSTHDLTPLSQPLIPPELASAFSISPEPRRTLLDVNRASRNTLSILRGGGNAHQAFSSSNNNNHNNLDDDEDEEGEEDIDRDGSGSDSRKQRKIDCTEEADSAVRTETTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDHLFASTPVPQSLHDSPAAAAAASHSHSHSQSHGHTNSHLPVHIPMPYPPHPMMSMPLLGMPHPHGHMGMPLASSSATSSYHSHPFNMLHQRDWPHPPHLAPNDNK. 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03620 306 Gene3D - 127 190 - -
Seca3g03620 306 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 10 280 IPR044841 GO:0003700|GO:0006355
Seca3g03620 306 Pfam Myb-like DNA-binding domain 135 183 IPR001005 -
Seca3g03620 306 MobiDBLite consensus disorder prediction 1 32 - -
Seca3g03620 306 MobiDBLite consensus disorder prediction 223 238 - -
Seca3g03620 306 MobiDBLite consensus disorder prediction 68 83 - -
Seca3g03620 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 187 IPR017930 -
Seca3g03620 306 MobiDBLite consensus disorder prediction 101 124 - -
Seca3g03620 306 MobiDBLite consensus disorder prediction 86 100 - -
Seca3g03620 306 MobiDBLite consensus disorder prediction 68 124 - -
Seca3g03620 306 MobiDBLite consensus disorder prediction 192 213 - -
Seca3g03620 306 MobiDBLite consensus disorder prediction 192 245 - -
Seca3g03620 306 NCBIfam myb-like DNA-binding domain, SHAQKYF class 132 184 IPR006447 GO:0003677
Seca3g03620 306 MobiDBLite consensus disorder prediction 1 18 - -
Seca3g03620 306 SUPERFAMILY Homeodomain-like 128 188 IPR009057 -
Seca3g03620 306 FunFam Two-component response regulator 127 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03620 Seca-Chr3 65324659 65328123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03620 1 270 G2-like Transcription Factor Family AT3G46640 53.691 1.41e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca3g03620 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03620 - - aprc:113858844 376.711