Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03614 ATGAACCCTAACCCCTCTTCGATTTCGCTCTGTTGCTCGCGGAGCTTTTTTCCTGTTTCGGTTAAGGAACCTGATCTCGGATCTTTTCCCCTTAAATCTGCTCGCGTCAATCTACTGTTGTTGGGCTTAATCAATATAGAACAGAAGTTTTGGGAAAAGTTTCGTGATCAGATTCCATCAGAGGTTTTTTTTACTGATCCTGCTGGAAATACATTTCCAGTAGGACTTTCTTTGAAAGGTGATAGGGCTGTGTTTAAACGAAATGTCGATACAATGACTAGATTTTATGGGCTGAGAAAAAAGCACAGTATGCTTTGTAAGTATAAGGGTGGTAACCAGTTTTATATATTGGTTGGTAATAGATATGGGGTTGAAATTAAGTATCCTGAAAGGAGGAACCCTGATGTAATTGTAGTATCTTCTGATGACTATGAAAGTGATCCTGAGGAGTACCCAGGATGGACTGTCACTTTGACAGGACCTGCTGCATCTGGGTCTAATCCATTGCTTATCCCTGCAAAATATGTCAGAAGAGTTCTTTCCAAAAATCAAAAGACTTTGACTATAAATGATGTAAATGGCGACAAAATAGGTTGTAAAATTTTGAAACCAAAAAGAAGAACAAATGAGCGATATCTTGGGAGGGGTTGGTACACCTTCTGTCGAAAGAAGAATTTCAAGGAGGGGGAAGAGCTTTATTTTTATACCAAGTGGGATGCTAAAAATTTGTGGGTCAAAAAGCTCAATAGTTAG 753 0.3891 MNPNPSSISLCCSRSFFPVSVKEPDLGSFPLKSARVNLLLLGLINIEQKFWEKFRDQIPSEVFFTDPAGNTFPVGLSLKGDRAVFKRNVDTMTRFYGLRKKHSMLCKYKGGNQFYILVGNRYGVEIKYPERRNPDVIVVSSDDYESDPEEYPGWTVTLTGPAASGSNPLLIPAKYVRRVLSKNQKTLTINDVNGDKIGCKILKPKRRTNERYLGRGWYTFCRKKNFKEGEELYFYTKWDAKNLWVKKLNS. 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03614 250 Pfam B3 DNA binding domain 157 246 IPR003340 GO:0003677
Seca3g03614 250 Gene3D - 150 246 IPR015300 -
Seca3g03614 250 Gene3D - 26 121 IPR015300 -
Seca3g03614 250 ProSiteProfiles B3 DNA-binding domain profile. 154 250 IPR003340 GO:0003677
Seca3g03614 250 SUPERFAMILY DNA-binding pseudobarrel domain 150 242 IPR015300 -
Seca3g03614 250 CDD B3_DNA 155 246 IPR003340 GO:0003677
Seca3g03614 250 PANTHER B3 DOMAIN-CONTAINING 32 235 - -
Seca3g03614 250 SUPERFAMILY DNA-binding pseudobarrel domain 39 118 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03614 Seca-Chr3 65287162 65291480 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca3g03614 B3 2.7e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03614 - K07005 lja:Lj0g3v0086279.1 73.1738