Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03609 ATGGAGTCTGATCATGATCAAGATCAAGGTGATGAGCAATTAGGTGCAAGCCAGGTGACCCCAAGGTCCTATGAGTGCAACTTCTGCAAGAGGGGATTCTCTAATGCACAAGCACTGGGAGGGCATATGAACATCCACAGGAAAGACAAAGCCAAACTCAAGCAACAATCTTCTTCTTCTTCAAACCAAACTCACCAACACAAGTCTAGTAGTGGAGAGCAGTATAGCAAATTAAACTGGAATTGGAATGTGTCTCAACAAGACCATGCCTCCTCCAGAGATGAAATTCACATGAGGCAGCTTCCACTCTTTGCCGAATCACCAACTACCACCGAATTAATAATAACGGAAAAGCCACAAGGTAGTCAAACTGAAGAAGGGGCTTTGATATCTGATCACCAAGGTGGTTCTTCAATGGAGTTAGACCTGGAATTAAGACTAGGGCCTGAGCCACAGGATTCATCAACGGGTACCAGAAAATTCTTTTGA 489 0.4417 MESDHDQDQGDEQLGASQVTPRSYECNFCKRGFSNAQALGGHMNIHRKDKAKLKQQSSSSSNQTHQHKSSSGEQYSKLNWNWNVSQQDHASSRDEIHMRQLPLFAESPTTTELIITEKPQGSQTEEGALISDHQGGSSMELDLELRLGPEPQDSSTGTRKFF. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03609 162 MobiDBLite consensus disorder prediction 1 21 - -
Seca3g03609 162 MobiDBLite consensus disorder prediction 40 74 - -
Seca3g03609 162 PANTHER OS07G0101800 PROTEIN 5 151 - -
Seca3g03609 162 ProSitePatterns Zinc finger C2H2 type domain signature. 26 46 IPR013087 -
Seca3g03609 162 MobiDBLite consensus disorder prediction 55 74 - -
Seca3g03609 162 Gene3D Classic Zinc Finger 13 81 - -
Seca3g03609 162 Pfam C2H2-type zinc finger 24 48 - -
Seca3g03609 162 MobiDBLite consensus disorder prediction 117 131 - -
Seca3g03609 162 MobiDBLite consensus disorder prediction 117 137 - -
Seca3g03609 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 24 51 IPR013087 -
Seca3g03609 162 SUPERFAMILY beta-beta-alpha zinc fingers 21 51 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03609 Seca-Chr3 65207870 65208358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03609 22 158 C2H2 Transcription Factor Family AT3G53820 34.043 1.26e-17 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g03609 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03609 - - gmx:100527724 177.948