Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03606 ATGGAACATGAGAAAGCCCCAATCTTGGAGGAAGCTAGGTCCAAGCAGGAAATTGAGTTACCCATTGTCTCTGACAGTCTTGATCTTCGTCCTATGACGACGGCTTCATCTTGTAATTCTGTTTGTCCTTTCTCCAGACAGGAAAACAGTGTTGTGGCATCAAAAGAGTCAGCAAAGTCAGCAAAGAAACTTTCTGGACTCATAGTTTTCTATGCTATTGTTATGGTTGTGGAAGTTATTGGTGGTGTAAAAGCTCATAGCCTAGCTGTCATCAGCGATGCTGCACACTTGCTTTCTGATATTGCTGGATTCTCTATCTCTCTCTTTGCAGTATGGGCTTCAAGTTGGGAGGCAACACCACATCAATCTTTTGGATACAATCGTCTTGAGGTTTTGGGTGCTCTTTTCTCTGTACAGTTAATTTGGTTGATATCTGGTTTTTTGATATATGAAGCAGTCGGTAGACTTCTTCACCAAAATGAGAGGGTGAATGGAATGCTCATGTTTGCAATTGCAGCATTTGGGTTTGTTCTTAATCTTATCATGGTTGTATGGATTGGTCATGATCATAGTCATCATCATGGCTTTGGAGACTCGGATCATGATCATGATCATGGTCATGGTCATGGTCATTGCTGTGGAGGCTCAGATCATGATCATGGGATGGAGGAACTACCTAAAATAGCTGATGAGGAGAACCTTACCATGCTTTCAAGTAGTCAGAAAAATATTAATGTCTTGAACATAAACCTGCAAGGGGCCTATTTGCATGTCATGGCTGATATGATTCAATCTATTGGAGTGATGATTGCTGGAGCCGTAATATGGGCTGAACCAGGGTGGTATATGGTTGACCTTATATGCACTCTTGTATTCTCTGTTTTATCCTTAGGTACTACTCTTCCCATGCTTAGGAATATTTATGGCATTCTGATGGAGAGGACACCGAGTGAGATCAATATCATTCAGCTAGAAAATGGCCTCAGAAGTATCAGGGGAGTGCAGCATGTTCATGACTTACACGTTTGGGCCATAACAGTAGGAAAAAATGTTTTATCTTGTCATGTAGTGGCTGAGCCTGGCATTAATTCCATTGATTTACTTGGCACGATTAAGCATTATTGTGAAAAAACATATCAAATACAACATGTAACCATTCAAATTGAGTAA 1170 0.4068 MEHEKAPILEEARSKQEIELPIVSDSLDLRPMTTASSCNSVCPFSRQENSVVASKESAKSAKKLSGLIVFYAIVMVVEVIGGVKAHSLAVISDAAHLLSDIAGFSISLFAVWASSWEATPHQSFGYNRLEVLGALFSVQLIWLISGFLIYEAVGRLLHQNERVNGMLMFAIAAFGFVLNLIMVVWIGHDHSHHHGFGDSDHDHDHGHGHGHCCGGSDHDHGMEELPKIADEENLTMLSSSQKNINVLNINLQGAYLHVMADMIQSIGVMIAGAVIWAEPGWYMVDLICTLVFSVLSLGTTLPMLRNIYGILMERTPSEINIIQLENGLRSIRGVQHVHDLHVWAITVGKNVLSCHVVAEPGINSIDLLGTIKHYCEKTYQIQHVTIQIE. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03606 389 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 317 389 IPR036837 -
Seca3g03606 389 SUPERFAMILY Cation efflux protein transmembrane domain-like 64 313 IPR027469 -
Seca3g03606 389 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 34 389 - -
Seca3g03606 389 Pfam Cation efflux family 68 312 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Seca3g03606 389 NCBIfam cation diffusion facilitator family transporter 64 389 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Seca3g03606 389 Gene3D Cation efflux protein transmembrane domain 60 311 IPR027469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03606 Seca-Chr3 65169856 65171025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03606 1 389 Inorganic Solute Cotransporters AT2G29410 48.980 2.87e-121 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03606 K14689 - gmx:100777590 568.54