Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03603 ATGACATTTAAGTTGTTAGATAATCTATATATCAAGATGACTCCAGTTAATTTGGCAGGGCAGTTTGGTGACACCACATACACCAAGGTGTTTGTTGGAGGATTGGCTTGGGAGACACAAAAAGAGACCATGAAGAAGTATTTTGAGCAATTTGGTGAAATCTTAGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACTTTCCGCGAACCAGAAGCTGCTATGAGAGCTTGTGTGGATGCTGCTCCTGTGATCGATGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCATTCAACACCAAAGCATGATCATCACAGTTACCAGGAAGCATGGTATCTGATTTACTCACATGGTGCAAACTGCAACAATCAGTTCTGTTCAGTTAATATCTCTTGCACAACAGAAATGGAGACCTTGCTGACAACCTCATCTTCCGCACACTTGAAGCAACAGGGCCCACCAAATGCACAATTGATGTTGGTTCAATGCTTGGAAGAACCCAGGTTGCAAACGATCGTGCTTCTCTTTTTTACGACTGCACTCTCCTGCTTTTCCTTTTCGTGTTCTCTCTTTACTTCTTCTCTACGATACGACTGCGACAACGATCCAAGTGTAATGGCCGAAACTGAGAGAACTCTGTACCCATACGTAACCGGATCCTCTGTAGTCGCTGTCAAATACAAAGATGGGATTCTAATGGCTGCTGATATGGGAGGTTCATATGGATCTACCTTGCGGTACAAGAGCGTTGAGCGTTTGAAGCCTGTTGGGAAACATTCTCTTCTTGGTGCTAGCGGGGAAATAAGTGACTTTCAGGAGATTCTACGCTACCTTGATGAGCTTATCCTTTATGACAACATGTGGGATGATGGGAATTCTCTGGGGCCCAAGGAGGTGCACAACTATTTAACTCGGGTGATGTATAATAGGCGCAACAAGTTCAACCCACTGTGGAACTCACTTATACTTGGTGGTGTGAAAAATGGGCAGAAGTACCTTGGCATGGTTAACATGATTGGCATTAATTTTGAAGACAACCATGTAGCAACTGGTCTTGGAAATCATCTTGCTAGGCCGATTCTCCGTGATGAGTGGCATGAAAACTTGACCTTCGAAGAAGGCGTCAGGTTACTGGAAAAATGCATGCGTGTGCTTTTGTATCGTGATAGGTCTGCTGTCAACAAGATTCAGATATCTAAAATTACTGAAGAAGGTGCTACTGTTTTCCAACCATTTTCGTTGAAAACATACTGGGAATTCTCTGCATTCAAGAATCCAACAGTGGGTGCTGAAGGTTCATGGTAG 1350 0.437 MTFKLLDNLYIKMTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKHSTPKHDHHSYQEAWYLIYSHGANCNNQFCSVNISCTTEMETLLTTSSSAHLKQQGPPNAQLMLVQCLEEPRLQTIVLLFFTTALSCFSFSCSLFTSSLRYDCDNDPSVMAETERTLYPYVTGSSVVAVKYKDGILMAADMGGSYGSTLRYKSVERLKPVGKHSLLGASGEISDFQEILRYLDELILYDNMWDDGNSLGPKEVHNYLTRVMYNRRNKFNPLWNSLILGGVKNGQKYLGMVNMIGINFEDNHVATGLGNHLARPILRDEWHENLTFEEGVRLLEKCMRVLLYRDRSAVNKIQISKITEEGATVFQPFSLKTYWEFSAFKNPTVGAEGSW. 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03603 449 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 85 IPR000504 GO:0003723
Seca3g03603 449 CDD proteasome_beta_type_4 233 426 IPR016295 -
Seca3g03603 449 FunFam Proteasome subunit beta type-7 227 445 - -
Seca3g03603 449 PANTHER BOULE-RELATED 17 130 - -
Seca3g03603 449 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 231 445 IPR029055 -
Seca3g03603 449 Pfam Proteasome subunit 233 415 IPR001353 GO:0005839|GO:0051603
Seca3g03603 449 CDD RRM_RBM24_RBM38_like 28 103 - -
Seca3g03603 449 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 229 436 IPR029055 -
Seca3g03603 449 ProSiteProfiles Proteasome beta-type subunit profile. 234 416 IPR023333 -
Seca3g03603 449 ProSitePatterns Proteasome beta-type subunits signature. 238 285 IPR016050 GO:0005839|GO:0051603
Seca3g03603 449 SMART rrm1_1 29 101 IPR000504 GO:0003723
Seca3g03603 449 SUPERFAMILY RNA-binding domain, RBD 27 115 IPR035979 GO:0003676
Seca3g03603 449 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 105 IPR000504 GO:0003723
Seca3g03603 449 Gene3D - 16 121 IPR012677 -
Seca3g03603 449 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 22 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03603 Seca-Chr3 65149119 65155625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03603 24 104 C2H2 Transcription Factor Family AT2G19380 43.210 2.43e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03603 K02736 - gmx:100527174 459.144