Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03595 ATGTGCAGGCAAAAGGCTTGTAAATTGAAATTAGGGGATCTTAAAGGAGCATTGTTGGATACAGAATTTTCAATGCGTGATGGAGAGAATAATGCCAAAGCTTTGTTCCGCCGAGGACAGGCTTACATGGCACTCCATAATATTGATGCTGCAGTTGAAAGCTTTAAGAAGGCACTGGCCTTGGAGCCAAATGATGCTGGAATAAAAAAGGAACTTCCTGATGCCAGGAAGAAGATAGCTGATAGGCGTGATCAAGAGAAAAAAAAACATATAGCAAGATGTTCCAATAACACAATGGTTAGTCTCAGGCTCTCAGCCACACAAATATAG 330 0.4121 MCRQKACKLKLGDLKGALLDTEFSMRDGENNAKALFRRGQAYMALHNIDAAVESFKKALALEPNDAGIKKELPDARKKIADRRDQEKKKHIARCSNNTMVSLRLSATQI. 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03595 109 SMART tpr_5 32 65 IPR019734 GO:0005515
Seca3g03595 109 Pfam Tetratricopeptide repeat 32 65 IPR001440 GO:0005515
Seca3g03595 109 SUPERFAMILY TPR-like 6 85 IPR011990 GO:0005515
Seca3g03595 109 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 6 89 IPR039663 -
Seca3g03595 109 ProSiteProfiles TPR repeat profile. 32 65 IPR019734 GO:0005515
Seca3g03595 109 Gene3D Tetratricopeptide repeat domain 2 92 IPR011990 GO:0005515
Seca3g03595 109 ProSiteProfiles TPR repeat region circular profile. 32 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03595 Seca-Chr3 64956591 64959424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03595 6 88 Calmodulin-binding Proteins AT3G25230 39.759 5.12e-10 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03595 K05864 - gmx:100804110 137.502