Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03578 ATGGGGACGCCGATTGAGGAAGTGCGAACTCTTTGGATTGGGGATTTACAGTACTGGCTTGACGAATCGTATCTCTCTCAGTGCTTCGCTCACACCGGCGATGTAGTTTCCGTCAAGATCATCCGCAACAAGATAACGGGCCAACCCGAGGGATACGGCTTTGTGGAGTTCGTTTCTCACGCAGCAGCGGAACGGGTTCTTCAGACTTACAACGGCACGCAAATGCCCGGAACCGAACAGGCTTTCAGGCTTAATTGGGCTTCTTTGGGTGGTGATGCTGGGCCCGACCACTCTATCTTCGTTGGTGATCTCGCTCCTGATGTTACGGATTATTTGCTCCAGGAGACTTTCCGAGTCCATTATCCTTCGGTTAGAGGTGCCAAAGTAGTCACTGATCCTGTTACTGGTCGTTCCAAAGGGTATGGGTTTGTTAAATTCTCTGATGAGAGCCAGAGGAATCGTGCCATGACCGAAATGAATGGGGTTTATTGCTCCACTCGCCCAATGCGTATCAGCGCTGCTACGCCTAAGAAGACCACTGCTTTTCAACACCAATATGCTCAGCCAAAAGCAGCAATATATCCAGTACCAGCATACCCTGCCCCAGTGAATCCAGTTCCACCAGAAAATGATATGAATAATACTACTGTTTTTGTTGGTAATTTGGATCTTAATGTCACAGAGGAAGAGCTTAAGCAGACCTTTTTGCCATTGGGAGATATTGTATCTGTAAAAGTTCATGCTGGCAAAGGATATGGTTTTGTTCAATTTGGAACTAGGTTTTCTTTTTTTCCCTTAATCTTTAACATGTGA 813 0.4649 MGTPIEEVRTLWIGDLQYWLDESYLSQCFAHTGDVVSVKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTQMPGTEQAFRLNWASLGGDAGPDHSIFVGDLAPDVTDYLLQETFRVHYPSVRGAKVVTDPVTGRSKGYGFVKFSDESQRNRAMTEMNGVYCSTRPMRISAATPKKTTAFQHQYAQPKAAIYPVPAYPAPVNPVPPENDMNNTTVFVGNLDLNVTEEELKQTFLPLGDIVSVKVHAGKGYGFVQFGTRFSFFPLIFNM. 271
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03578 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 257 IPR000504 GO:0003723
Seca3g03578 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 258 IPR000504 GO:0003723
Seca3g03578 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 164 IPR000504 GO:0003723
Seca3g03578 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Seca3g03578 270 CDD RRM2_SECp43_like 96 175 - -
Seca3g03578 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 176 IPR000504 GO:0003723
Seca3g03578 270 Gene3D - 96 173 IPR012677 -
Seca3g03578 270 SMART rrm1_1 216 269 IPR000504 GO:0003723
Seca3g03578 270 SMART rrm1_1 10 85 IPR000504 GO:0003723
Seca3g03578 270 SMART rrm1_1 98 172 IPR000504 GO:0003723
Seca3g03578 270 FunFam Polyadenylate-binding protein RBP47B 8 86 - -
Seca3g03578 270 FunFam Polyadenylate-binding protein RBP47B 87 187 - -
Seca3g03578 270 CDD RRM1_SECp43_like 10 88 - -
Seca3g03578 270 SUPERFAMILY RNA-binding domain, RBD 95 260 IPR035979 GO:0003676
Seca3g03578 270 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 6 260 - -
Seca3g03578 270 Gene3D - 203 263 IPR012677 -
Seca3g03578 270 Gene3D - 8 88 IPR012677 -
Seca3g03578 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 89 IPR000504 GO:0003723
Seca3g03578 270 SUPERFAMILY RNA-binding domain, RBD 5 77 IPR035979 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca3g03578 Seca-Chr3 64647478 64649449 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03578 10 257 Eukaryotic Initiation Factors Gene Family AT2G36660 26.275 4.74e-21 90.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03578 - - lja:Lj3g3v3240000.1 444.506