Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03556 ATGAGTTGGAACCCACACATGGAGGTCCATTACAATAACATCAGCTATCCCTATAGTACTGCTGGAAGCTTTATTGAATATTTTGAAGGTCTCACCTACGAACATGTCAACTTTATTTTTTCCGGTGCATCACATTCTCAGGAGAGTTCATACCCTTCAAATTCAGGCTTTTACAAGTTTGGATGGTCTGAACCTGAGAGTAATTCATACTATCGTTACAATCATGGTTATGATGTAAATCATCAGGAACCACTGGTGGATGAATATAGGAGGCCTTCAGAAAATTCATCGACAATCAATGAACAGACAGAAGCTGTAAGCACAGAGTGGGGAGAAGGTGGAAACACTGACACACGAGACAGTTCTATTGAATGTCCACGAAGACATCATAGTAATTCCAATGATTATCAGGTCATTTGGCAAGACAATATTGATCCTGACAACATGACCTATGAGGAACTACTTGAATTAGGTGAGGCTGTTGGAACTCAAAGCCGTGGTCTCACCCAAGAACAGATCTCCTTGCTTCCAGTGTCAAAGTACAAGTGTGGGTTCTTCTTGAGGAAGAAGTCAAGGGATGAGAGATGTGTGATTTGCCAGATGGAATATAAAAGAGGGGACAAGCGGATCACTTTGCCATGTAAACATGTCTATCATGCCAGTTGTGGGAACAGATGGCTTAGCATCAATAAGGCAAGATATTTACCAATTTATTATGAACTTGTTAAGCTTGCCCTATATGTTACACGGAAGTGTTTGCCGACAAGTCAAAGCACAAATAATCACACGAGCGAATGGGTAACAAGCATATGTTTCTGTTTCTCCTTGAGGTTGGGGGACTTTCATAGAAATACATTTATTTGTTTTCCATTTTCGTTGTGA 882 0.4048 MSWNPHMEVHYNNISYPYSTAGSFIEYFEGLTYEHVNFIFSGASHSQESSYPSNSGFYKFGWSEPESNSYYRYNHGYDVNHQEPLVDEYRRPSENSSTINEQTEAVSTEWGEGGNTDTRDSSIECPRRHHSNSNDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISLLPVSKYKCGFFLRKKSRDERCVICQMEYKRGDKRITLPCKHVYHASCGNRWLSINKARYLPIYYELVKLALYVTRKCLPTSQSTNNHTSEWVTSICFCFSLRLGDFHRNTFICFPFSL. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03556 293 MobiDBLite consensus disorder prediction 92 120 - -
Seca3g03556 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 234 IPR013083 -
Seca3g03556 293 MobiDBLite consensus disorder prediction 92 129 - -
Seca3g03556 293 Pfam Ring finger domain 195 230 IPR001841 -
Seca3g03556 293 FunFam E3 ubiquitin ligase BIG BROTHER 158 240 - -
Seca3g03556 293 SUPERFAMILY RING/U-box 192 232 - -
Seca3g03556 293 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 241 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03556 Seca-Chr3 64091922 64096864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03556 5 232 C3H Transcription Factor Family AT3G63530 41.880 2.52e-55 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03556 K19045 - gmx:100793907 461.455