Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03554 ATGAGCACCACAGGGTCAATGAAGTCTTGGTCTCCAGATGAAAAAATAGAGGCTAATGAGATCGATGATCTTAAGAAACCATTGTTGCAGACTCCACAAGATGTCACAGTTGGTGTAGTTACGCCTCAAATAAATGATATCAAGAGTTCATCCTGGGTAAAGATTGTTGAGTCTAAGGTTAGAAGCCTTAACGGGGTAAACGGCATCATGGAGTCGCCACTTGATCACAGAGTTGCAATCAAATATGTCCCAAATTCCATTACTGCAAATAAAATAAAAGAAACCACAGAAGAGACTGGTTTTAGAGTTGATGAGCTCAAGGAGCAAGATATATCAGAATGCCGAATCAATATTAAGGGAATGACATGCACAAGTTGCTCTCAGTCTGTTGAGCATGCCCTTCAAATGATTGATGGAGTCACAAAGGCAGTAGTAGGTCTAGCTTTAGAGGAAGCAAAAGTACACTTTGATCCTAAACTCATTGATACTAAGAAAATCATTGAAGCTATAGAAGATGCTGGCTTTGGAGCAGATCTCATCAGCTCCCAGAATGATATGAACAAAGTGCAACTTAAACTTGAAGGGGTACATTCTCCAGAAGATGTAAATGTCATAATTTCTTCGCTTAATTTGACTGTAGGAGTGAATCATGTTGAAATGGATTTGACAGAACATATAGTTACAGTTAGCTATGATCCAGACATTACAGGTCCAAGATCTCTTATTCACTGCATTCAGGCAGCTAGTAATGGCCCCAATGTGTATCAAGCAACCTTGTACACTCCTTCAGGAAAAAGAGAAATGGAGAAGGCGAATGAAATTCGTATGTACAGGGACCAAGTTTTGTTTAGCTGCTTATTGTCTGTTCCTGTGTTTGTATTTTCCATGGTTCTTCCCATGATTCCTCCATACGGCAACTGGTTAAACTATAAGATACATAACATGCTCACTCTTGGGTTGTTTTTGAGATGGATCCTCAGCACACCTGTGCAGTTCATTGTTGGCAAAAGGTTCTATGTAGGATCATATCATGCACTAAGGCGAAGGTCTGCTAACATGGATGTGCTGGTTGCGCTTGGAACTAATGCTGCTTATTTTTACTCACTATATGTTGTAATTAAAGCACTGATCTCACCTACATTTCAAGGACAAGATTTCTTCGAGACCAGTTCTATGCTGATATCGTTTATTCTATTAGGAAAATATTTGGAGATTGTGGCTAAAGGGAAAACATCAATTGCTTTAGAAAAGCTGACACAACTTGTTCCTGATAAAGCTTATTTATTAGCAATTGATACTGATGGAAATATCATCACAGAGACAGAAATTGACACTGAACTTATACAAAAGAATGACATAATTAAGATTGTTCCTGGTGCCAAAATTCCTGTTGATGGTATTGTCATAAAAGGAAAAAGCTGTGCAAATGAAAGTATGATCACCGGGGAGGCAAGACCTATTAATAAAAGTCCAGGAGACAAGGTTATCAGTGGGACCATCAATGAGAATGGCTGCTTACTGGTTAAGGCCACTCATGTTGGATCAGAGACTGCACTTTCTCAAATTGTTCAACTTGTAGAAGCTGCTCAACTTGCTAGAGCACCAGTTCAAAAACTTGCTGATCATATTTCAAGGGTTTTTGTTCCAATAGTGGTTGTTGCAGCATGCATAACTTGGCTGGGATGGTTTATTCCTGGAGAAGCCGGTTTTTACCCTAAATATTGGATACCAAAAGCTATGGACACATTTGAATTTGCTTTGCAATTTGCAATTTCTGTGCTAGTAGTTGCTTGCCCATGTGCTCTGGGTCTGGCGACACCAACGGCAATCATGGTTGCTTCAGGCGTTGGTGCTTCTCAAGGTGTGCTCATCAAGGGCGGTGATGCAATGGAAAAGGCACACAAGGTTAAAATTGTTGTCTTTGATAAGACCGGGACATTGACAATTGGGAAGCCAGTGGTTGTTAGCGCAGTGCTGTTTTCTAAAATTTCTGTGGAGGAGTTATGTGACATGGCAATTGCTGTGGAGGCAAATAGTGAACATCCCATAGCAAAAGCTGTTGTGGCACATGCTAAGAGGCTGCGCCAGAAATCTGTGTCCTGCACTGAACAAGTCCTAGATGTGAAGGACTTTGAGGTACACCTGGGGGCAGGGGTAAGTGGAAAATCCAATGATAAAACAGTTTTAGTTGGAAACAAGAGACTCATGCATGCTTATAATGTCCCAATACGTCCTGAGGTTGAGAGGTACATCTCTGAGAATGAAGCTCTTGCAAGAACCTGTGTATTAGTTTCAATTAACGGAAAAGTTGCTGGAGCATTCTCTGTAACTGATGCTGTAAAGCCAGAGGCTAAGCGTGTCATATCTTTTCTCCACTCCATGGGCATCTCAAGCATCATAGTGACTGGTGATAACTGGGCCACTGCAAATGCTATTGCAAATGAAGTTGGTATTGATAAGGTCTTTGCTGAGACAGATCCTCTGGGAAAAGCTGATAAAGTGAAAGACTTGCAGATGAAAGGAATGACTGTGGCAATGGTGGGTGATGGAATAAATGATTCGCCAGCCTTAGCTGCTGCTGATGTTGGGATGGCAATTGGTGCTGGAACTGACATAGCTATAGAAGCAGCTGATATAGTTCTTGTCAAAAGCAACTTGGAAGATGTGATTACAGCAATAGATCTGTCTAGAAAGACCATGTCTCGTATCTGGCTCAACTATATCTGGGCTTTTGGTTACAACATTCTAGGCATGCCAATTGCAGCTGGCGTCTTGTACCCCTTTTTTGGGATCAGGTTGCCACCATGGCTTGCTGGTGCTTGCATGGCTGCTTCATCACTTAGCGTGGTTTCTTCATCCCTCTTGCTGATGTTCTATAGAAAACCTTTGCATGTGGATTCCACTTGA 2907 0.4142 MSTTGSMKSWSPDEKIEANEIDDLKKPLLQTPQDVTVGVVTPQINDIKSSSWVKIVESKVRSLNGVNGIMESPLDHRVAIKYVPNSITANKIKETTEETGFRVDELKEQDISECRINIKGMTCTSCSQSVEHALQMIDGVTKAVVGLALEEAKVHFDPKLIDTKKIIEAIEDAGFGADLISSQNDMNKVQLKLEGVHSPEDVNVIISSLNLTVGVNHVEMDLTEHIVTVSYDPDITGPRSLIHCIQAASNGPNVYQATLYTPSGKREMEKANEIRMYRDQVLFSCLLSVPVFVFSMVLPMIPPYGNWLNYKIHNMLTLGLFLRWILSTPVQFIVGKRFYVGSYHALRRRSANMDVLVALGTNAAYFYSLYVVIKALISPTFQGQDFFETSSMLISFILLGKYLEIVAKGKTSIALEKLTQLVPDKAYLLAIDTDGNIITETEIDTELIQKNDIIKIVPGAKIPVDGIVIKGKSCANESMITGEARPINKSPGDKVISGTINENGCLLVKATHVGSETALSQIVQLVEAAQLARAPVQKLADHISRVFVPIVVVAACITWLGWFIPGEAGFYPKYWIPKAMDTFEFALQFAISVLVVACPCALGLATPTAIMVASGVGASQGVLIKGGDAMEKAHKVKIVVFDKTGTLTIGKPVVVSAVLFSKISVEELCDMAIAVEANSEHPIAKAVVAHAKRLRQKSVSCTEQVLDVKDFEVHLGAGVSGKSNDKTVLVGNKRLMHAYNVPIRPEVERYISENEALARTCVLVSINGKVAGAFSVTDAVKPEAKRVISFLHSMGISSIIVTGDNWATANAIANEVGIDKVFAETDPLGKADKVKDLQMKGMTVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADIVLVKSNLEDVITAIDLSRKTMSRIWLNYIWAFGYNILGMPIAAGVLYPFFGIRLPPWLAGACMAASSLSVVSSSLLLMFYRKPLHVDST. 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03554 968 Pfam haloacid dehalogenase-like hydrolase 636 861 - -
Seca3g03554 968 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 40 963 - -
Seca3g03554 968 ProSiteProfiles Heavy-metal-associated domain profile. 187 253 IPR006121 GO:0046872
Seca3g03554 968 SUPERFAMILY Calcium ATPase, transmembrane domain M 388 631 IPR023298 -
Seca3g03554 968 Pfam E1-E2 ATPase 428 618 - -
Seca3g03554 968 NCBIfam heavy metal translocating P-type ATPase 353 956 IPR027256 GO:0006812|GO:0016020|GO:0019829
Seca3g03554 968 Gene3D - 38 104 - -
Seca3g03554 968 ProSitePatterns E1-E2 ATPases phosphorylation site. 642 648 IPR018303 -
Seca3g03554 968 SFLD Haloacid Dehalogenase 622 899 - -
Seca3g03554 968 Gene3D - 408 530 - -
Seca3g03554 968 PRINTS H+-transporting ATPase (proton pump) signature 847 863 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g03554 968 PRINTS H+-transporting ATPase (proton pump) signature 878 903 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g03554 968 Gene3D - 724 778 IPR023299 GO:0000166
Seca3g03554 968 Gene3D - 647 723 IPR023299 GO:0000166
Seca3g03554 968 FunFam Copper-transporting ATPase 1, putative 408 530 - -
Seca3g03554 968 Gene3D - 183 259 - -
Seca3g03554 968 SUPERFAMILY HMA, heavy metal-associated domain 109 182 IPR036163 GO:0046872
Seca3g03554 968 SUPERFAMILY HAD-like 638 953 IPR036412 -
Seca3g03554 968 CDD P-type_ATPase_Cu-like 281 943 - -
Seca3g03554 968 SUPERFAMILY Calcium ATPase, transduction domain A 440 526 IPR008250 -
Seca3g03554 968 Gene3D - 111 182 - -
Seca3g03554 968 FunFam Copper-transporting ATPase HMA5 111 182 - -
Seca3g03554 968 ProSiteProfiles Heavy-metal-associated domain profile. 38 104 IPR006121 GO:0046872
Seca3g03554 968 PRINTS P-type cation-transporting ATPase superfamily signature 772 783 - -
Seca3g03554 968 PRINTS P-type cation-transporting ATPase superfamily signature 794 804 - -
Seca3g03554 968 PRINTS P-type cation-transporting ATPase superfamily signature 847 866 - -
Seca3g03554 968 PRINTS P-type cation-transporting ATPase superfamily signature 870 882 - -
Seca3g03554 968 PRINTS P-type cation-transporting ATPase superfamily signature 640 654 - -
Seca3g03554 968 PRINTS P-type cation-transporting ATPase superfamily signature 476 490 - -
Seca3g03554 968 ProSiteProfiles Heavy-metal-associated domain profile. 112 178 IPR006121 GO:0046872
Seca3g03554 968 SUPERFAMILY HMA, heavy metal-associated domain 182 252 IPR036163 GO:0046872
Seca3g03554 968 Gene3D - 607 903 IPR023214 -
Seca3g03554 968 SUPERFAMILY HMA, heavy metal-associated domain 43 105 IPR036163 GO:0046872
Seca3g03554 968 FunFam Probable copper-transporting ATPase HMA5 752 904 - -
Seca3g03554 968 Pfam Heavy-metal-associated domain 116 175 IPR006121 GO:0046872
Seca3g03554 968 NCBIfam HAD-IC family P-type ATPase 393 924 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g03554 968 CDD HMA 116 177 IPR006121 GO:0046872
Seca3g03554 968 SFLD p-type atpase 622 899 IPR044492 -
Seca3g03554 968 ProSitePatterns Heavy-metal-associated domain. 118 147 IPR017969 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03554 Seca-Chr3 64071813 64077597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03554 43 966 Primary Pumps ATPases AT1G63440 55.806 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03554 K17686 - gmx:100793894 1508.04