Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03551 ATGACCAATTCCTACAGCTCCTCCAATGAGTTCAATTTTTTGTTGGACCTCAATTCTCCATGTCTTCTCTCTTCTTCTTCTTCTTCTTCTTCATCTTATTCCAACCCACCATTCCATTTTCCTTCTAGTTATCATAACTGCACAAGTCACATATCTCCTCCTCTAAGAAAACCCCTTCCTGATCTCCTTCATCAAAGCACTACAAGACATGATCAAGATCTTGAATCTTCATTTAGTACCATGGAAGTGGAGAAGAAGGAACAAAGCATATCATCTAGCTCTTTGGATTTGGACGAGGCTGTGACGGTGGCTTTACACTTAGGGCTTCCAAGCACGACTTCAGCAGCTGATTTAGCTTACTCCTCACAGAAAGAAGAAAAAGTGAGTGTTGGTTCCTCTGAATGTTTGTCAAATAGAATTAACAAAGGACAATATTGGATCCCTACCTCTACTCAGATTCTGATTGGTCCAACACAATTCTCATGCTCCCTTTGTTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAGTCTCTGAGGGGAACACAACCAACAGCTATGCTTAAACTCCCTTGTTTTTGCTGTGCACCTGGATGTAAGAACAACATTGACCATCCAAGAGCAAAACCACTCAAAGACTTCAGAACCCTTCAAACACATTACAAGAGAAAGCATGGAACGAAGCCTTTCATGTGTAGAAAATGTTGCAAAGCATTTGCTGTGAGAGGTGATTGGAGGACTCATGAAAAAAACTGTGGGAAGCTCTGGTATTGTTCTTGTGGGTCTGATTTTAAGCATAAAAGATCACTTAAAGATCATATCAAGGCATTTGGACATGGACATACATGTTATGGAATTGATTGTCTTGATCAATATGATGAAGCAGGCTCCGAAATTGAACAAGAAAATTAA 954 0.4036 MTNSYSSSNEFNFLLDLNSPCLLSSSSSSSSSYSNPPFHFPSSYHNCTSHISPPLRKPLPDLLHQSTTRHDQDLESSFSTMEVEKKEQSISSSSLDLDEAVTVALHLGLPSTTSAADLAYSSQKEEKVSVGSSECLSNRINKGQYWIPTSTQILIGPTQFSCSLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLKLPCFCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGHGHTCYGIDCLDQYDEAGSEIEQEN. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03551 317 PANTHER ZINC FINGER PROTEIN WIP2 30 315 IPR043584 GO:0003700|GO:0010468
Seca3g03551 317 MobiDBLite consensus disorder prediction 67 82 - -
Seca3g03551 317 SUPERFAMILY beta-beta-alpha zinc fingers 226 264 IPR036236 -
Seca3g03551 317 ProSitePatterns Zinc finger C2H2 type domain signature. 162 182 IPR013087 -
Seca3g03551 317 Gene3D Classic Zinc Finger 204 293 - -
Seca3g03551 317 FunFam Zinc finger protein WIP2 213 295 - -
Seca3g03551 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 187 IPR013087 -
Seca3g03551 317 MobiDBLite consensus disorder prediction 67 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03551 Seca-Chr3 63842127 63844644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03551 101 315 C2H2 Transcription Factor Family AT3G57670 68.526 8.70e-124 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g03551 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03551 - - gmx:100802239 450.669