Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03545 ATGCATTTTACTTCTGGTATCCTAACAGAGTTTGCAGAGGCATTGAGGCTAAGAAGACCAACTCTGTCATTCGTAAGTGTGTCAGGGTTCAACTCAAAAAATGGGAAGAAGATTGACGCATTTGTCTCAAATTATGGTTGCTTAAACTTCATAGAAGAGAATGATAAAGTCTTGATAGCTGGATTTGGACGAAAAGGTCATGTCGTGGGTACCAATACTTAA 222 0.3874 MHFTSGILTEFAEALRLRRPTLSFVSVSGFNSKNGKKIDAFVSNYGCLNFIEENDKVLIAGFGRKGHVVGTNT. 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03545 73 Pfam Ribosomal protein S12/S23 32 70 IPR006032 GO:0003735|GO:0005840|GO:0006412
Seca3g03545 73 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 33 65 IPR006032 GO:0003735|GO:0005840|GO:0006412
Seca3g03545 73 Gene3D - 24 72 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03545 Seca-Chr3 63754305 63756523 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03545 33 70 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 84.211 1.47e-17 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03545 K02973 - dpub:104309379 70.4774