Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03543 ATGGATTCACCAACAGCAGCTCCTCCACCATCATTGGAGCTGGACCTTGACAACCTCAGAGCAATCAAAGTCCTCGGCAAAGGTGCCATGGGCACCGTCTTCCTCGTCCACGACACCACCACCACCACCACAACCACCTCTTTCGCTCTCAAGGTTGTAGACAAAACCTCCATCCACACCAAACTCGACGCCGAACGCCGTGCCCGGTGGGAAATCCAAGTCCTCTCCACCCTCTCCCACCCTTTCCTCCCTTCCATTCTTGGCACATTCGAGTCCCAACAGTTTCTCGCATGGGCTCTCCCTTACTGCCCCGGTGGTGACCTCAACGTCCTTCGTTACCGCCAAAACGACCGCGTTTTCTCCCCTTCGGTAATCCGTTTCTACCTCGCTGAGATCCTCTGCGCTCTCGACCACCTGCATTCCATGGGCATCGCTTACAGAGATTTAAAACCCGAAAATGTCCTCATCCAACATTCTGGCCACCTCACCCTCACCGATTTCGATCTCTCTCGCAAACTAACCCCAAAAACCACCAAAACCGTTGCTCCTTCTCCAATGCCTTTGCCTCTTCCTGATTCCAAGCCTCCAGAGCCTCGCCGCAAACAACACCGCCGGAATTTTTCCCGTTGGATCCCCCTCCTCCCGCCGGACAACAGTCATCAAAACAAAAACGGGCTTAAGAAGGCCAAGTCCGCCCGAGTCAGCCCGGTGAGTCGACGGAAGCCGAGTTTCTCCAACAACGGCGAACGCTCCAACTCCTTCGTCGGCACCGAGGAGTACGTCTCGCCGGAGGTCGTACGCGGCGACGGTCACGAGTTCGCCGTTGATTGGTGGGCCCTTGGGATACTCGCGTACGAAATGCTGTACGGTAAGACGCCGTTCAAGGGAAAGAACAGGAAGGAAACGTTCCGAAATGTGTTGACGAAACCGCCGGAGTTCGTCGGGAAACGGTCGGCGTTGACGGACCTGATTGAGAAATTGTTGGAGAAGGACCCTACGAAGCGATTGGGTTATGCGCGAGGCGCTGTGGAAATTAAGGAGCATGAGTTCTTCAGAGGGATGCATTGGGACATATTGACGGAGGTGGTGCGGCCGCCGTTCATTCCGTCCAGAGATGACGGTGCCAGGGAATCGCCGGAGAAATTGCCCGCGGGGAATGGCGGCGTGGATATTAGGGATTACTTCCAGAGCTTGAAACCGCCGCCGTCGTTGCCGCCTTCGCCGTTACCGTCACCGTCGTGTAAATTTAGAAGCAGGAGCAATGTTTCTCTAACAGAATTCTAA 1284 0.5537 MDSPTAAPPPSLELDLDNLRAIKVLGKGAMGTVFLVHDTTTTTTTTSFALKVVDKTSIHTKLDAERRARWEIQVLSTLSHPFLPSILGTFESQQFLAWALPYCPGGDLNVLRYRQNDRVFSPSVIRFYLAEILCALDHLHSMGIAYRDLKPENVLIQHSGHLTLTDFDLSRKLTPKTTKTVAPSPMPLPLPDSKPPEPRRKQHRRNFSRWIPLLPPDNSHQNKNGLKKAKSARVSPVSRRKPSFSNNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILAYEMLYGKTPFKGKNRKETFRNVLTKPPEFVGKRSALTDLIEKLLEKDPTKRLGYARGAVEIKEHEFFRGMHWDILTEVVRPPFIPSRDDGARESPEKLPAGNGGVDIRDYFQSLKPPPSLPPSPLPSPSCKFRSRSNVSLTEF. 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03543 427 SMART serkin_6 19 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03543 427 Gene3D Transferase(Phosphotransferase) domain 1 247 370 - -
Seca3g03543 427 Gene3D Transferase(Phosphotransferase) domain 1 107 181 - -
Seca3g03543 427 Gene3D Phosphorylase Kinase; domain 1 19 106 - -
Seca3g03543 427 MobiDBLite consensus disorder prediction 370 427 - -
Seca3g03543 427 MobiDBLite consensus disorder prediction 238 255 - -
Seca3g03543 427 Pfam Protein kinase domain 22 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03543 427 Pfam Protein kinase domain 246 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03543 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Seca3g03543 427 FunFam Serine/threonine-protein kinase UCNL 19 106 - -
Seca3g03543 427 ProSiteProfiles Protein kinase domain profile. 19 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03543 427 MobiDBLite consensus disorder prediction 176 255 - -
Seca3g03543 427 ProSitePatterns Protein kinases ATP-binding region signature. 25 51 IPR017441 GO:0005524
Seca3g03543 427 SUPERFAMILY Protein kinase-like (PK-like) 16 388 IPR011009 -
Seca3g03543 427 MobiDBLite consensus disorder prediction 413 427 - -
Seca3g03543 427 FunFam Serine/threonine-protein kinase OXI1 107 175 - -
Seca3g03543 427 FunFam Serine/threonine-protein kinase OXI1 249 370 - -
Seca3g03543 427 PANTHER FLIPPASE KINASE 1-RELATED 14 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03543 Seca-Chr3 63736511 63737794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03543 14 412 AGC Kinase Gene Family AT3G20830 61.330 3.86e-162 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca3g03543 Pkinase 4.1e-34 CL0016