Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03536 ATGGAGTCAGATCTTCAGCAACACCCTCCCATGTTTCTGGACCATCAGCACCACCACCAGAACCAGATGAATTCAGGCTTAACAAGGTTCCGATCGGCTCCAAGTTCGTATTTTTCGAATATCATTGACCGAGAGTTCTACGAACACGTCTTCAATCGCCCCTCAAGCCCTGAAACAGAGAGAATTTTCCAACGGTTTGTGAATAGTCTTGGTGATGGTGACGGTGCTGCAGAGGATTCACTTGCTCAGAATCTTTCAACTGTTCAGCAACAACAAATTCCTGCAGTGAAGGAAGAGGTTAATCAGCAACAGCAATCTCAGGCTATGCCAATGCCATCGATGAATAATGAACCCGTGGTTCTACAACAACAGCAACCACAAAGCAATATGATGAATAATTTTAGTTCCTCTGCGCCTCAGAATTTTTACCAAAGCACTGGACGACCACCTTTGCCAACACAGATGAAGACTGGTCGTGCAAATAATTCGAATCTTATCAGACATGGTAGTTCACCTGCTGGATTGTTTTCAAACATCAACATTGAAAGTGGCTATGCTGCTATAAGAGGCATGGGAACTTTGGGAGCTGGTGGTAACACTAGTGAGGAAGCAAAATTTTCTCCTGCAACGAGGTTAAAGAATGCACCAAACTTCTCCTCAGGGTTAATGTCATCAATAGCTGAAACTGGGAATAAAAGCAGTGCACAAAATAATCCAGAAAGTGAAGGTTTTGCTGAAAGCATCCCAGGTTTCCCTGTAGGTTCTTGGGATGATTCTGCAATGATGCCTGACAATATGACTGGTGTAAAAAGATACAGAGATGATCATGATGTTAAACCATTTTCTGGTTTAAATGCAGCTGAAAGCCAGAATGAAAAAGGAGGAGGCCAGGCTCCTGCTCCTTTGGCTCATCACTTGAGTTTGCCAAATACTTCAGCAGAAATGGCAGCCATTGAGAAGTTTTTGCAGTTCTCAGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGTGGCTGTGCCACTCACCCTAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAACTACAAGATCTTGTCCCTAACATGGATAAGCAAACAAACACATCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTTCAAAACCAAGTTCAGACTCTTTCAGACAATCGAGCTAAGTGTACGTGTTCACACAACAAGCAGCAATAA 1233 0.4307 MESDLQQHPPMFLDHQHHHQNQMNSGLTRFRSAPSSYFSNIIDREFYEHVFNRPSSPETERIFQRFVNSLGDGDGAAEDSLAQNLSTVQQQQIPAVKEEVNQQQQSQAMPMPSMNNEPVVLQQQQPQSNMMNNFSSSAPQNFYQSTGRPPLPTQMKTGRANNSNLIRHGSSPAGLFSNINIESGYAAIRGMGTLGAGGNTSEEAKFSPATRLKNAPNFSSGLMSSIAETGNKSSAQNNPESEGFAESIPGFPVGSWDDSAMMPDNMTGVKRYRDDHDVKPFSGLNAAESQNEKGGGQAPAPLAHHLSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTSDMLDLAVEYIKDLQNQVQTLSDNRAKCTCSHNKQQ. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03536 410 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 408 - -
Seca3g03536 410 FunFam Transcription factor bHLH130 family 339 408 - -
Seca3g03536 410 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 388 IPR011598 GO:0046983
Seca3g03536 410 Pfam Helix-loop-helix DNA-binding domain 343 389 IPR011598 GO:0046983
Seca3g03536 410 Gene3D - 339 409 IPR036638 GO:0046983
Seca3g03536 410 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 401 IPR036638 GO:0046983
Seca3g03536 410 SMART finulus 344 394 IPR011598 GO:0046983
Seca3g03536 410 Coils Coil 378 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03536 Seca-Chr3 63583949 63587914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03536 1 405 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 41.487 2.28e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g03536 HLH 7.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03536 - - gmx:100803833 600.897