Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03525 ATGTTTCTGAAAGATCATTACCTGTCTGGCTCCCCAGTTATCATCAGTGATTGTATGGCTCACTGGCCAGCTAAGTCAAAATGGAATAACATAGATTACTTGCTAAGAGTTGCTGGTGATCGCACAGTTCCAGTTGAGGTTGGGAAGAACTATTTATGTGCAGATTGGAAGCAAGAGCTAATTACATTTTCAGAGTTTCTTGAGCGGATAAAGTCCAGTGGCCATTCTCCTGGTTGTCCTACATATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTTCGGAAAGATATCTTTATTCCTGACTATTGTTTTGCTGGTGGAGGGGAGCTAAGATCTCTCAATGCTTGGTTTGGTCCAGCTGGAACAGTGACACCACTACACCATGATCCACATCATAACATACTAGCTCAGGTTGTTGGGAAAAAATACATCAGGCTTTATTCAGCATCATTGTCTGAGGAACTTTTCCCCTACTCAGATACCATGCTTAGCAATTCCAGCCAGGTTGATTTAGATGACGTAGATGAAAGGAAGTTTCCTAAGGTGCAAGACTTGGAATTTGTAGACTGTATTTTAGAGGAAGGTGAAATGTTATATATCCCTCCGAAATGGTGGCACTATGTGCGCTCATTAACTACCAGTTTATCGGTTAGCTTTTGGTGGAGTGAGGGTGAAAGTTCAGATGCATCCTAA 699 0.4163 MFLKDHYLSGSPVIISDCMAHWPAKSKWNNIDYLLRVAGDRTVPVEVGKNYLCADWKQELITFSEFLERIKSSGHSPGCPTYLAQHPLFDQINELRKDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSASLSEELFPYSDTMLSNSSQVDLDDVDERKFPKVQDLEFVDCILEEGEMLYIPPKWWHYVRSLTTSLSVSFWWSEGESSDAS. 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03525 232 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 2 227 - -
Seca3g03525 232 SUPERFAMILY Clavaminate synthase-like 2 224 - -
Seca3g03525 232 SMART cupin_9 81 231 IPR003347 -
Seca3g03525 232 Pfam Cupin-like domain 2 225 IPR041667 -
Seca3g03525 232 Gene3D Cupin 1 224 - -
Seca3g03525 232 FunFam lysine-specific demethylase JMJ30 1 223 - -
Seca3g03525 232 ProSiteProfiles JmjC domain profile. 90 232 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03525 Seca-Chr3 63496535 63500660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03525 2 223 Acyl Lipid Metabolism Gene Families AT3G45880 24.627 5.40e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca3g03525 Cupin_8 9.1e-49 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03525 K24444 - gmx:100813075 447.588