Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03495 ATGGACTCCGAGGATGATATGCACGACGCCAACGACGTTGAGTCCCTCGACGACGATTTCTACAGTGGTGAGACGGATGATGCTGCCATGGACTACTACAGCGACTACGACGACGACGCCGATGATTACTTCGACGATGCCGACAGGGTTGAGTCTCGTCGCCCGGAGCAAAATTTTACCATCTTGAAGGAATCCGATATCCGACAAAGACAGGAAGATGACATCGCTAGAGTAGCTGCGGTTCTTTCCTTATCAAAAGTTCTTGCAAGTATTCTACTTCGTCACTACAATTGGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGATCGTGTTCGGAAAGCAGTTGGCTTGTTGGAGAAGCCAGTTGTCCAATATTCTCCTAATGCTAGAGAGCTTACGTGCGGCATCTGTTTTGAAAACTATCCTCGAGCTAGGATTGAAATGGCTTCTTGTGGTCATCCCTATTGTTTCTCATGCTGGGAAGGCTATATCAGCACATCCATTAATGATGGTCCTGGATGTTTGATGCTGAGGTGTCCTGATCCCACTTGTGGTGCCGCTGTTGGTCAAGATATGATTAATCTATTAGCAACCTATGAAGATAGGCAAAAATATGCTCGTTACCTTCTTAGATCTTATATTGAAGACAATAAAAAGTCAAAGTGGTGTCCTGCTCCTGGTTGTGAACATGCTGTCACTTTTGATGCTGGTAGCGGAAATTATGATGTCTCTTGCCTCTGTTCATATAGTTTTTGTTGGAATTGCACAGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTGGCAAAGTGGATTTTGAAAAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAATTCAAAGCCTTGTCCCAAGTGCAAGCGACCAATTGAAAAAAATCAAGGTTGCATGCACATGACGTGCACTCCACCCTGTAAATATGAATTTTGCTGGCTATGTGTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGAGTGTATGATGATACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACATCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACACACAGTGCCAACCTGAGTCACAGCTTAAGTTCATAACGGAGGCCTGGCTACAGATAGTTGAGTGTAGGCGAGTGCTGAAATGGACGTATGCATATGGGTACTATTTACCTGAACATGAGCATGCAAAAAAACAGTTCTTTGAGTACCTGCAAGGTTTTATTTTTCAACTTGAGTTTAATTGGAAATTGTTGTGTTTGCGGGGGTTCTCCCATAAATAA 1434 0.4365 MDSEDDMHDANDVESLDDDFYSGETDDAAMDYYSDYDDDADDYFDDADRVESRRPEQNFTILKESDIRQRQEDDIARVAAVLSLSKVLASILLRHYNWSVSKVHDAWFADEDRVRKAVGLLEKPVVQYSPNARELTCGICFENYPRARIEMASCGHPYCFSCWEGYISTSINDGPGCLMLRCPDPTCGAAVGQDMINLLATYEDRQKYARYLLRSYIEDNKKSKWCPAPGCEHAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKYEFCWLCVGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGFIFQLEFNWKLLCLRGFSHK. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03495 477 CDD Rcat_RBR_ARI7-like 291 345 - -
Seca3g03495 477 ProSiteProfiles TRIAD supradomain profile. 133 346 IPR044066 -
Seca3g03495 477 SUPERFAMILY RING/U-box 207 275 - -
Seca3g03495 477 FunFam RBR-type E3 ubiquitin transferase 131 220 - -
Seca3g03495 477 Pfam IBR domain, a half RING-finger domain 206 268 IPR002867 GO:0008270
Seca3g03495 477 Pfam IBR domain, a half RING-finger domain 285 333 IPR002867 GO:0008270
Seca3g03495 477 CDD RING-HC_ARI6-like 134 195 - -
Seca3g03495 477 MobiDBLite consensus disorder prediction 1 32 - -
Seca3g03495 477 SUPERFAMILY RING/U-box 287 335 - -
Seca3g03495 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 217 IPR013083 -
Seca3g03495 477 Gene3D - 264 465 - -
Seca3g03495 477 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 66 434 IPR031127 GO:0004842|GO:0016567
Seca3g03495 477 SMART ibrneu5 272 342 IPR002867 GO:0008270
Seca3g03495 477 SMART ibrneu5 206 268 IPR002867 GO:0008270
Seca3g03495 477 FunFam RBR-type E3 ubiquitin transferase 269 463 - -
Seca3g03495 477 SUPERFAMILY RING/U-box 133 218 - -
Seca3g03495 477 CDD BRcat_RBR_ANKIB1 213 277 - -
Seca3g03495 477 ProSiteProfiles Zinc finger RING-type profile. 137 181 IPR001841 -
Seca3g03495 477 Pfam Ariadne domain 355 445 IPR045840 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03495 Seca-Chr3 62926835 62934371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03495 17 457 ARIADNE family AT1G65430 71.460 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03495 K11968 - gmx:100784195 885.174