Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03494 ATGGGAAGCTGCGTATCAACACAAGGAAAAAAAGCCCCACGCAAGAGGTCAAAGGACCTTAAAAAGCACAAGAGCCAGCGCCATGAGCCTACAACACCGACGGCGCGTAGGTCTAGCGTCACGGCGCGTCCCCTCAACGTCGTAACGAACCCGAGTCCAGGTAACATCTACGATAAGTACCAGGTTGGGAAGGAGCTAGGGCGAGGAGAGTTTGGGGTGACGCACCGTTGCATTGACCTGAAAACCGGTGAGGCATTCGCGTGCAAGAAGATAGCGAAGACGAAGCTGAGGACGGAGATTGATATTCAGGATGTGAGGAGAGAGGTGCAGATCATGAGGCATTTGCCTCAACACCCTAACATTGTGTGTTTCAGAGAGGCCTTTGAGGATAAAGATGCTGTCTACCTTGTCATGGAACTTTGTGAAGGTGGTGAGCTTTTCGATAGGATTGTTGCCAAAGGCCATTACACTGAACGCGCTGCTGCTAATGTTACCAAAACCATACTTGAAGTTTGCAAGGTGTGCCATGATCATGGTGTGATACATAGGGACTTAAAACCAGAGAATTTCTTATTTGCAGATGGATCTGAGACTGCTCAATTGAAGACAATTGATTTTGGCCTTTCCACCTTCTATATGGCTGGGGAAAGATTCAGTGAAATTGTTGGAAGTCCCTATTACATGGCTCCCGAGGTTTTAAGACGTAACTATGGACCAGAAATTGATGTGTGGAGCACAGGCGTAATTCTTTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAAACTGAAGAAGGGATTGCACAGGCGATAATCAGGGGTACTTTAGATTTCACAAGAGATCCTTGGCCTAAAGTTTCAGAGGAAGCAAAAGACCTAGTGAAGCGTATGCTTGATCCTAATCCATACACCCGGATTACAGTTCAAGAAGTCCTTGAACATTCCTGGATACAAAATAGGGAACATGGTCGAAATGTTTCTCTTGGAGACCAAGTTAAAATGAGGATCAAACAATTCTCCTTGATGAACAGGTTCAAAAAGAAGGTTCTTAGAGTAAGTTTCAGAACCTCGATCGTGGTGGCTGATATTTTGCCAGATGAGCAAGTTGATGGGTTTAGGCAAATGTTCGATATGATGGACAAGGACAAAAATGGACACTTGACATTTGAAGAGCTCAAAGAAGGCCTTTCAATGATTGGACATGCTATGCCTGATCCTGATGTCCAGATGTTAATGGATGCGGCAGATATTGATGGAAACGGCACCCTGAATTGTGAAGAGTTCATCACAATGAGTGTTCATCTGAGAAGGATAGGAAGTGATGAGCATCTCTCTGAAGCATTCAATTACTTCGACAAGAATCAGAGTGGGTATGTTGAGTTTGAGGAATTGAAAGATGCCTTATCAGATGATGACTCAGGAGCCATTGACGACCAGGTGATAAAAGACATTCTAAATGATGTCGATTTGGATAAGGACGGTCGAATAAGTTTTGAGGAGTTTAAGGCAATGATGAAGGCAGGAGGAGATTGGAAAATGGCTTCTCGCCAGTATTCAAGGGCATTGCTAAATGCATTAAGCTTCAGGATGTTTAAGGACAAATCTGCAAATGCAACCAATTAA 1626 0.441 MGSCVSTQGKKAPRKRSKDLKKHKSQRHEPTTPTARRSSVTARPLNVVTNPSPGNIYDKYQVGKELGRGEFGVTHRCIDLKTGEAFACKKIAKTKLRTEIDIQDVRREVQIMRHLPQHPNIVCFREAFEDKDAVYLVMELCEGGELFDRIVAKGHYTERAAANVTKTILEVCKVCHDHGVIHRDLKPENFLFADGSETAQLKTIDFGLSTFYMAGERFSEIVGSPYYMAPEVLRRNYGPEIDVWSTGVILYILLCGVPPFWAETEEGIAQAIIRGTLDFTRDPWPKVSEEAKDLVKRMLDPNPYTRITVQEVLEHSWIQNREHGRNVSLGDQVKMRIKQFSLMNRFKKKVLRVSFRTSIVVADILPDEQVDGFRQMFDMMDKDKNGHLTFEELKEGLSMIGHAMPDPDVQMLMDAADIDGNGTLNCEEFITMSVHLRRIGSDEHLSEAFNYFDKNQSGYVEFEELKDALSDDDSGAIDDQVIKDILNDVDLDKDGRISFEEFKAMMKAGGDWKMASRQYSRALLNALSFRMFKDKSANATN. 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03494 541 ProSitePatterns EF-hand calcium-binding domain. 490 502 IPR018247 -
Seca3g03494 541 ProSitePatterns EF-hand calcium-binding domain. 453 465 IPR018247 -
Seca3g03494 541 Pfam Protein kinase domain 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03494 541 SMART serkin_6 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03494 541 Gene3D - 327 508 - -
Seca3g03494 541 ProSiteProfiles Protein kinase domain profile. 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03494 541 Pfam EF-hand domain pair 385 435 IPR002048 GO:0005509
Seca3g03494 541 CDD STKc_CAMK 59 317 - -
Seca3g03494 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Seca3g03494 541 PANTHER SERINE/THREONINE-PROTEIN KINASE 54 499 - -
Seca3g03494 541 Gene3D Phosphorylase Kinase; domain 1 62 145 - -
Seca3g03494 541 MobiDBLite consensus disorder prediction 1 46 - -
Seca3g03494 541 SUPERFAMILY Protein kinase-like (PK-like) 43 335 IPR011009 -
Seca3g03494 541 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Seca3g03494 541 FunFam Calcium-dependent protein kinase 1 62 145 - -
Seca3g03494 541 ProSiteProfiles EF-hand calcium-binding domain profile. 477 512 IPR002048 GO:0005509
Seca3g03494 541 MobiDBLite consensus disorder prediction 32 46 - -
Seca3g03494 541 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Seca3g03494 541 FunFam Calcium-dependent protein kinase 7 327 510 - -
Seca3g03494 541 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Seca3g03494 541 SMART efh_1 372 400 IPR002048 GO:0005509
Seca3g03494 541 SMART efh_1 481 509 IPR002048 GO:0005509
Seca3g03494 541 SMART efh_1 444 472 IPR002048 GO:0005509
Seca3g03494 541 SMART efh_1 408 436 IPR002048 GO:0005509
Seca3g03494 541 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Seca3g03494 541 SUPERFAMILY EF-hand 365 506 IPR011992 -
Seca3g03494 541 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Seca3g03494 541 Gene3D Transferase(Phosphotransferase) domain 1 146 326 - -
Seca3g03494 541 Pfam EF-hand domain pair 443 507 IPR002048 GO:0005509
Seca3g03494 541 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Seca3g03494 541 FunFam calcium-dependent protein kinase 13 146 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03494 Seca-Chr3 62919157 62923027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03494 1 534 EF-hand Containing Proteins AT2G31500 68.081 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca3g03494 Pkinase 2.4e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03494 K13412 - gmx:100801716 919.457