Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03490 ATGCATCCCAAACGGTCTAGCCAAGATGGCCTTGTTTCTGGGCCAGTGCGCACAAGTGACAGAATCAAGGCAAGGCCAAATGCGTATAGCCGAGCATACTTTTATTACAACTCAAATATTAGGCACAATAGGAAAAGAAAGAACAAGGCAAGGACAGCAGCTTCACAGATTGCTAAGTTGTTGCGTCCAGGAAATCAGAAAGCACGAAATCAGAAAGCACGGGATTCAAATACTAATCCTGGCTCAGCCAACCTTCGGCGTTCAACTAGGAAGAGAAGGGCTAATTTAAATCTTCAAGATTTCATAGACAGCTCTGGAGCTGAGGATGAAGACTTGATGAGACCCAGATATCGACCATTGAGACACCAGATTAACAATAGTGTCAATCGGGATGGTATAATGTCTTCCAAGCGCAAAAGAGCAATGGAGACTAAATCAACACCTCGACGTGAAGGTCTACGACCTCGTCGTTCAAGGGCTGCTGCAAGAGAACAAATAATTTTAGATTCGGATGATGAGCATGACCTTTCAGAAGAGAAGGTTGAACAAGATGAAACAGAACACGAAAATGATGTTGAGGAAAATGATGCAGATGAGGGTCCAAATGAGATCGAGGGGGATGTTGAGGGTGAAGATGAAGGCGAGGATGAAGGTGATGAAGATGGTGATGATGAAGAGGGTGAAGAAGAGCAGGATGGTAGAAGGCGCTACGATCTTCGAAATCGTTCAGATGTCCGCAGGATCTCTATGGAGGAAGGGAAAACCCAGCCAAGATCTCCTCGAAGAGTGTTACATCAAGGTATGGGAAATAAGGTCAACAGGGATGTAAGGAAGGGTGGATCACGAGTACATAAGCGTCATCGCTTAGCAAGGCCTGAAGATTCTGATGACTCCCTTCTTGTGGATGAGTTGGACCAAGGCCCTGCGATTCCATGGGGGCGAGGTGGCAGCAGATCTGGCCCACCTTGGCTTTTTGGGGGTTTAGACATGCATGGAACAGCGGCTTGGGGATTAAATCTTGCTGCATCAGGTTGGGGTCATCAAGGTGATGCTTTGGCTACTCTAACTTCTGGGATTCAAACTGCTGGGCCAAGCTCTAAGGGAGGGGCAGATATCCAACCCTTACAGGTTGATGATAGTGTTAGCTTTGATGATATAGGTGGTCTCTCTGAATACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTATTGTATCCAGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGGGTGTTGTTATGTGGGCCCCCTGGCACGGGGAAAACGTTAATTGCAAGAGCTTTGGCTTGTGCTGCTTCAAAAGCTGGCCAAAAGGTTAGCTTTTACATGCGCAAAGGAGCAGATGTGCTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAGGAAGCACAAAGGAATCAACCTTCAATTATCTTCTTTGATGAAATAGATGGACTAGCACCTGTGAGGTCTAGTAAGCAAGAGCAAATTCACAATTCCATTGTATCCACTTTGCTTGCTTTGATGGATGGTCTTGATTCTCGTGGACAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTGCGACGTCCTGGTAGATTTGATCGTGAATTTAACTTTCCCTTGCCTGGTTGTGAGGCACGTGCTGAAATATTAGACATTCATACTCGTAAGTGGAAGCATCCTCCTCCAGAGGAACTGAAAAAGGAACTTGCAGCTAGTTGTGTAGGTTATTGTGGTGCTGATCTAAAGGCTCTCTGTACTGAAGCTGCCATTCGTGCTTTCCGTGAAAAATATCCACAGGTTTATACAAGTGATGACAAATTTCTCATAGATGTTGATTCTGTCAGGGTAGAAAAGTATCATTTTATTGAAGCAATGTCTACAATTACTCCTGCTGCTCATAGGGGAGCTATTGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCCTGTCTTCAGAGACATCTAGAAAAAGCCATGAGTATTATATCTGATATTTTCCATCCAGTATCTGTTGCATCAGAATTGACCAAACTTTCTATGCTTTCATACGGGTCTGCAATTCCACTTGTGTATCGGCCTAGGCTTCTACTTTGTGGTGGTGAAGGTACAGGGCTGGATCATCTTGGACCTGCGGTTTTACATGAACTTGAAAAATTTCCTGTACATTCGTTAGGACTTCCATCTCTTCTATCAGATCCTAGTGCAAAGACACCAGAGGAGGCATTGGTGCATATATTTGGTGAAGCGAGAAGAACAACACCATCAATTCTCTATTTACCGCAGTTTGATGTTTGGTGGGAAACTGCTCATGAACAGCTCAGAGCTGTTCTGCTGACTCTGCTAGAAGAATTGCCTTCTGACTTACCTATCTTACTACTCGGGACATCCTCAGTTGCACCTGCTGAAGTTGAGGAAGTGCCTACTTCAGTTTTTCCTCATCGCTCAATTTATGAAGTGAACATGCCATCTACCAAAGATAGGACTTTGTTTTTTGACCGTTTAATAGAAGCTGCTCTGTCAGTATTGTTGGAGGGAATGAGCAAGAAATCCCAGGATACAGGATGCCTTTCTGAACTTCCTAAGGCACCAAAATTGGCAAGTGGTCCCAAGGTATCTGAGCTAAAAGCAAAGGTGGAAGCCGAGCAACATGCACTTCGCAGATTGCGAATGTGCCTTAGAGATGTTTGCAACCGGATATTATATGATAAGCGATTTAATGCCTTCCATTATCCAGTCTCAGATGAAGATGCACCTAATTATCGCTCAATTATACAGAACCCAATGGACATGGCTACTGTCCTACAGCATGTCGATAATGGCCACTATATTACATGTGCTGCATTCCTGCAGGACATTGATCTCATTGTTTCCAATGCAAAGGCTTACAATGGAGACGACTACAATGGTGCTAGGATTGTCAGTAGAGCTTGTGAGCTCCGTGATGCGGTGCATGGGATGCTCTCACAGATGGATCCAGCACTGGCTGCATACTGTGACAAGATTGCTAGTCAAGGTGGCCCAGTTCATTTTCCTGATGAATTAGGGGATTCTACATTCCCTGCTACTCCTGTTGTACAGCTGGGTATTGCTACTAGAATGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAATATGGATCAGAGTTATGAAGCATTGAAGCGGACTAAGAAGATCGGTGATGTGCATGCAGCAGAAGACAAATCACAAGATTCAATACCTGCAAAGTCCTCCCAGGAGCATCAGGCAAATGAAATGAATTCTGAAAGGCTGGAACCTGTAGAAGTTGATGGAAACTTGCATGGCACTTGTACAAATAGCCTTGCTGATGGCAGCAGCCTTCATGATGTCACAATGCTAGATGGTGAATTTTCAAGACAAGTGGAGTCGATCAAGCAGCATTTTGTTAAGCGTAGTGAAAATTACAGCATTCCACAACTTGAAAGGCTTTACACGAGAATTATGAAGGGCGTGTTTGAAACTAAGGATAAAGGAATGAATGGTGATCTTAAGACTTCGATTTTGAGCTTTTTGTTGAAATTTGTAGAGGATGATGCAAATTTCTGA 3615 0.4396 MHPKRSSQDGLVSGPVRTSDRIKARPNAYSRAYFYYNSNIRHNRKRKNKARTAASQIAKLLRPGNQKARNQKARDSNTNPGSANLRRSTRKRRANLNLQDFIDSSGAEDEDLMRPRYRPLRHQINNSVNRDGIMSSKRKRAMETKSTPRREGLRPRRSRAAAREQIILDSDDEHDLSEEKVEQDETEHENDVEENDADEGPNEIEGDVEGEDEGEDEGDEDGDDEEGEEEQDGRRRYDLRNRSDVRRISMEEGKTQPRSPRRVLHQGMGNKVNRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGPAIPWGRGGSRSGPPWLFGGLDMHGTAAWGLNLAASGWGHQGDALATLTSGIQTAGPSSKGGADIQPLQVDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPPEELKKELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVRVEKYHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSIISDIFHPVSVASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTLLEELPSDLPILLLGTSSVAPAEVEEVPTSVFPHRSIYEVNMPSTKDRTLFFDRLIEAALSVLLEGMSKKSQDTGCLSELPKAPKLASGPKVSELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFNAFHYPVSDEDAPNYRSIIQNPMDMATVLQHVDNGHYITCAAFLQDIDLIVSNAKAYNGDDYNGARIVSRACELRDAVHGMLSQMDPALAAYCDKIASQGGPVHFPDELGDSTFPATPVVQLGIATRMSARLRHVQPEVNMDQSYEALKRTKKIGDVHAAEDKSQDSIPAKSSQEHQANEMNSERLEPVEVDGNLHGTCTNSLADGSSLHDVTMLDGEFSRQVESIKQHFVKRSENYSIPQLERLYTRIMKGVFETKDKGMNGDLKTSILSFLLKFVEDDANF. 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03490 1204 SUPERFAMILY Bromodomain 899 1012 IPR036427 GO:0005515
Seca3g03490 1204 MobiDBLite consensus disorder prediction 61 92 - -
Seca3g03490 1204 CDD RecA-like_Yta7-like 385 554 - -
Seca3g03490 1204 Gene3D - 893 1021 IPR036427 GO:0005515
Seca3g03490 1204 Pfam AAA+ lid domain 583 620 IPR041569 -
Seca3g03490 1204 Pfam ATPase family associated with various cellular activities (AAA) 421 556 IPR003959 GO:0005524|GO:0016887
Seca3g03490 1204 MobiDBLite consensus disorder prediction 133 174 - -
Seca3g03490 1204 FunFam ATPase family, AAA domain-containing 2 379 562 - -
Seca3g03490 1204 Gene3D - 679 850 IPR027417 -
Seca3g03490 1204 MobiDBLite consensus disorder prediction 1 24 - -
Seca3g03490 1204 Gene3D - 379 649 IPR027417 -
Seca3g03490 1204 FunFam ATPase family AAA domain-containing protein 2B 557 642 - -
Seca3g03490 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 919 IPR027417 -
Seca3g03490 1204 CDD Bromo_AAA 901 1010 - -
Seca3g03490 1204 SMART AAA_5 417 558 IPR003593 GO:0016887
Seca3g03490 1204 ProSiteProfiles Bromodomain profile. 924 986 IPR001487 GO:0005515
Seca3g03490 1204 MobiDBLite consensus disorder prediction 229 259 - -
Seca3g03490 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 645 IPR027417 -
Seca3g03490 1204 Pfam Bromodomain 914 982 IPR001487 GO:0005515
Seca3g03490 1204 Gene3D - 557 642 - -
Seca3g03490 1204 MobiDBLite consensus disorder prediction 114 296 - -
Seca3g03490 1204 MobiDBLite consensus disorder prediction 1077 1106 - -
Seca3g03490 1204 PANTHER AAA DOMAIN-CONTAINING 1074 1183 IPR045199 -
Seca3g03490 1204 ProSitePatterns AAA-protein family signature. 526 544 IPR003960 GO:0005524|GO:0016887
Seca3g03490 1204 SMART bromo_6 901 1008 IPR001487 GO:0005515
Seca3g03490 1204 FunFam ATPase family AAA domain-containing protein 893 1021 - -
Seca3g03490 1204 MobiDBLite consensus disorder prediction 70 85 - -
Seca3g03490 1204 MobiDBLite consensus disorder prediction 175 228 - -
Seca3g03490 1204 PRINTS Bromodomain signature 933 949 IPR001487 GO:0005515
Seca3g03490 1204 PRINTS Bromodomain signature 967 986 IPR001487 GO:0005515
Seca3g03490 1204 PRINTS Bromodomain signature 949 967 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03490 Seca-Chr3 62773489 62783007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03490 367 621 Calmodulin-binding Proteins AT3G56690 36.293 6.90e-41 162