Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03486 ATGGGGCACAGTTCGAAGAAGAAGAAACGCGGAGGAGGAAGTGGACGCAGAAGCAAAGGAAGAACACCTTCCAAAGATCACGCTTCTCAATTCCACGCCGATGATAACGACCAACTTTCCGAGGAGATTACTGCATTATGTGCAATTTTCGAAGAGGACTGCAAAGTTCTTCCTGGATCGCCTCCTCAAATAGTTATTAAGCTCAGGCCTTACTCGAAGGACATGGGTTACGAGGACGTAGATGTTTCTGCTGTTCTTGTTGTCAGGTGCTTGCCTGGTTATCCCTTCAAGTGCCCCAAGTTGCAGATTACACCTGAGAAGGGTTTGTCAGAAAGTGATGCTAATAATCTTTTGTCTCTCCTTCAAGATCAGGCTAATTTAAATGCTAGGGAGGGACGGGTAATGATCTTTAATTTGGTTGAGGCTGGTCAAGAATTTTTGTCTGGAATTGAGCCAATTGCCAAGTCAACTGAATCTACACTTTTACACTCAACTACAGAAAGCAATGAAGAATTGTTTCCGAAGGATATGACATCTTCAAATAAGAATAGATCTTTTGTTTATGGTTTCATTGACCTTTTCAGTGGCTATGGAGAGTCCTGGAATTGGGGTTTTGGAATAGATGAAACTGCTGGAAAAAGTTCTTCTCTTCCTCCCTCTAAGTTAGATGCCTCAAAACCATATTTTGATGCCCGGGAAAAGAAATCTGATAGTAAGGAAAAACCGCTCATATTGCAAGAACTTCCTGCCAAATTAGACACTGTTGGAGAAGCCAGTGAAGACAGCAATAATAGCTTATCTTTGACTCATTCAAGTACGTCTCTGGAGGGGGGTTTTGTAGGGAAAAACAATGAAGGAGAGAAAGAGTATTTTATTGTTGATGAGTATACAACAGAAGATAATGAGTATGAAAGCGAGTCTTCAGAGTCTCTGTCTTCTGCCTCCTTGCCTCATCACCAAGCATCTCAAACAGTAGAAAAGGATCTAGTAATGGTTCACATGCTTCGACTTGTTTGTGCTTCAAAAGGAACATTGGCTGACTCTTTGCCACAATTAGCAACAGAGCTGTACAACTTAGGGATCTTCTCTGACTTGGCACGTGATATGGCATCTAAACCGCCGTCCCTTTTTAACAAAACCTTTGATTGTACCTTCCAGAAACACTTGGCATCATCGAGAATATCTCAATTTTGGAAACCTTCTTCTGATCTTGGAGGATCTAACACAGTCCCCCATAGTTCTCGATATTTGAATGATTTTGAGGAGCTACGGCCACTTGGTCATGGTGGTTTTGGTCATGTTGTGTTGTGCAAAAATAAACTCGATGGAAGGCAATATGCAGTAAAGAAAATTCGCCTTAAGGACAAAAGCATGCCTGACCGAATATTAAGGGAAGTAGCTACACTTTCTCGTTTACAGCATCAGCACGTTGTTCGGTATTATCAGGCTTGGTTTGAAACTGGAGTTGCAGATTCTTATGGTGATCCTGCTTGGGGTTCAAGGACTCCAGTGAGCTCTACTTTCAGCTTTAAAGGTGCAAGCTCCAATGATGCCATTGGGCATGAGAATCAACTTGAATCAACATACCTTTATATACAAATGGAGTACTGTCCCAGGACTCTTCGCCAGGTGTTTGAATCATATAATCATTTTGACAAAGAACTGGCATGGCATTTGTTTCGCCAAATAGTGGAGGGTTTGGCACACATACATGGACAAGGAATAATTCATCGGGACCTAACACCAAATAACATATTCTTTGATGCTCGCAATGATATTAAAATTGGTGATTTTGGTCTTGCCAAGTTCTTGAAGTTGGAGCAGCTGGATCAAGATCTAGGCCATCCTGCTGATACAGCTGGAGTTTCCATTGATGGCACTGGACAAGTTGGGACATATTTCTATACAGCTCCTGAAATTGAGCAAGGATGGCCGAAGATTGATGAAAAGGCTGATATGTACAGCTTAGGAGTGGTTTTCTTTGAGCTTTGGCACCCATTTGGGACAGCAATGGAGAGACATGTTGTTTTATCTGATCTGAAACTGAAAGGGGAACTTCCACCTACTTGGGTTGCTGAGTTTCCAGAACAGGAATCCTTGCTGCGGCGGTTGATGTCTCCAGGTCCTTCAGATCGCCCTTCAGCTACAGAACTTCTGAGAAATGCATTTCCTCCACGAATGGAGTCCGAATTATTGGATGGCAAGTGA 2208 0.4248 MGHSSKKKKRGGGSGRRSKGRTPSKDHASQFHADDNDQLSEEITALCAIFEEDCKVLPGSPPQIVIKLRPYSKDMGYEDVDVSAVLVVRCLPGYPFKCPKLQITPEKGLSESDANNLLSLLQDQANLNAREGRVMIFNLVEAGQEFLSGIEPIAKSTESTLLHSTTESNEELFPKDMTSSNKNRSFVYGFIDLFSGYGESWNWGFGIDETAGKSSSLPPSKLDASKPYFDAREKKSDSKEKPLILQELPAKLDTVGEASEDSNNSLSLTHSSTSLEGGFVGKNNEGEKEYFIVDEYTTEDNEYESESSESLSSASLPHHQASQTVEKDLVMVHMLRLVCASKGTLADSLPQLATELYNLGIFSDLARDMASKPPSLFNKTFDCTFQKHLASSRISQFWKPSSDLGGSNTVPHSSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRQYAVKKIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVADSYGDPAWGSRTPVSSTFSFKGASSNDAIGHENQLESTYLYIQMEYCPRTLRQVFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDLGHPADTAGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERHVVLSDLKLKGELPPTWVAEFPEQESLLRRLMSPGPSDRPSATELLRNAFPPRMESELLDGK. 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03486 735 FunFam eIF-2-alpha kinase GCN2 540 733 - -
Seca3g03486 735 FunFam eIF-2-alpha kinase GCN2 408 536 - -
Seca3g03486 735 CDD STKc_EIF2AK4_GCN2_rpt2 413 719 - -
Seca3g03486 735 Gene3D Ubiquitin Conjugating Enzyme 28 156 IPR016135 -
Seca3g03486 735 SUPERFAMILY Protein kinase-like (PK-like) 416 723 IPR011009 -
Seca3g03486 735 Pfam RWD domain 38 146 IPR006575 GO:0005515
Seca3g03486 735 Pfam Protein kinase domain 420 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03486 735 SMART RWD2001b 41 150 IPR006575 GO:0005515
Seca3g03486 735 MobiDBLite consensus disorder prediction 19 35 - -
Seca3g03486 735 MobiDBLite consensus disorder prediction 1 16 - -
Seca3g03486 735 ProSitePatterns Tyrosine protein kinases specific active-site signature. 575 587 IPR008266 GO:0004672|GO:0006468
Seca3g03486 735 Gene3D Phosphorylase Kinase; domain 1 408 536 - -
Seca3g03486 735 ProSiteProfiles Protein kinase domain profile. 420 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03486 735 SUPERFAMILY UBC-like 36 147 IPR016135 -
Seca3g03486 735 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 63 727 - -
Seca3g03486 735 ProSiteProfiles RWD domain profile. 41 150 IPR006575 GO:0005515
Seca3g03486 735 Gene3D Transferase(Phosphotransferase) domain 1 539 730 - -
Seca3g03486 735 ProSitePatterns Protein kinases ATP-binding region signature. 426 450 IPR017441 GO:0005524
Seca3g03486 735 MobiDBLite consensus disorder prediction 1 35 - -
Seca3g03486 735 FunFam eIF-2-alpha kinase GCN2 29 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03486 Seca-Chr3 62675959 62686941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03486 373 723 MAP Kinase Kinase Kinase AT1G63700 25.762 8.67e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Seca3g03486 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03486 K16196 - gmx:100797996 1222.99