Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03471 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCTCCGGCAACGGTGATTTGTTGCGCGGATGAGGCGGCTTTGTGTGCTAAGTGTGACGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAACACCAGAGGCTTCTTCTTCAGTGTCTATCAAACAAGCTTCCCAGATGTGATATATGCCAAGATAAGGCAGCTTTCATATTCTGTGTTGAAGACAGAGCACTCTTCTGTAAGGACTGTGATGAACCAATTCATTCAGCTGGTAGCCTTTCTGCAAACCACCAGCGTTTTCTTGCTACTGGTATCCGGGTGGCTTTGGGTTCTAATTGCGCTAAAGGCAATGAAAAAAGTCATGTGGAACCATCTAATCCAAATGCACAAGAAGTTCCTGTGAAAATTCCTGCTCAGCAAGTGCCTAGCTTCCCATCCTCTTGGGCTGTTGATGACTTGTTGGAATTAACAGACTTTGAATCACCAGACAAAAAGCAATCCCTGGAGTTTGGAGAGCTCGAATGGCTAGCAGATGCTGGTCTTTTCAGTGAACAGTTTCCTCAGGAAGGTTTAGCTGCGGCTGAAGTTCCTCAACTTCCAGTAACACACTCTAGCAGTGTCACCTCATACAGAGCCCCTAAATCCTTTATGTCATACAAAAAGCCTAGGATTGAAGTTCTAGATGAAGATGATGATGAGCACTTCACTGTGCCTGATCTTGGCTAA 717 0.4477 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALFCKDCDEPIHSAGSLSANHQRFLATGIRVALGSNCAKGNEKSHVEPSNPNAQEVPVKIPAQQVPSFPSSWAVDDLLELTDFESPDKKQSLEFGELEWLADAGLFSEQFPQEGLAAAEVPQLPVTHSSSVTSYRAPKSFMSYKKPRIEVLDEDDDEHFTVPDLG. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03471 238 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca3g03471 238 Gene3D Classic Zinc Finger 1 120 - -
Seca3g03471 238 CDD Bbox1_BBX-like 5 47 - -
Seca3g03471 238 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Seca3g03471 238 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
Seca3g03471 238 SMART bboxneu5 52 99 IPR000315 GO:0008270
Seca3g03471 238 SMART bboxneu5 4 47 IPR000315 GO:0008270
Seca3g03471 238 CDD Bbox1_BBX-like 57 98 - -
Seca3g03471 238 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Seca3g03471 238 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03471 Seca-Chr3 62305281 62309843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03471 1 161 Orphan Transcription Factor Family AT1G06040 67.262 3.31e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Seca3g03471 zf-B_box 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03471 - - gmx:100779183 448.358