Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03467 ATGGATAACAACAAACCCTCTTACGTAACTTCAACACCAACCCTTGATATGAAATCAAAACAACTACCACCGACATCATCATCATCGTCGTCGTCGTCATCACTACATCCTCCACCACCTATTCTGGATACCACTCCGCGCGCCGGTAGATTTAGCCATGATATTAGCGGGATGCCTAATAATCGTATAAGAAACACAGGTCACAGACGCGCTCAGTCTGAGATTCTCACCCTCCCGGATAATATCAACATCGATGTTGATCTAGACACCATAGGTGACCTCTCATTCTCTGATGGCACCACCGAGGAAGACTTGCTTCCCGCCTACCTCGATGTGGATAATATCAAACCATCCTCTCAAGCCCCTGGTTCTACTAACAACATAGATATTGCTATCGGTACTACCGATACCAATGAAAGTCTCAAGGTTGGGCACGAACGTAGTTTGTCCATGAATGGCTCAACATCTATCATCAAACCGAACATGTTGTTCTCTTCTTCTGTAAGTGACTCTACAATTAACTCAAGAAAAGGAATGTCTGCTTTGAAACTTGAGGAGCTTGCCTTGGTTGATTCGAAGCGTGCTAAAAGGTTACGAGCAAATAGACAATATGCAATGAGATCAAGGGCAAGGAAGGCGCGCTATATTTTTGAGCTTGAAAAGAGAGTGCAAACATTGAAAATTGAAGCAACATCCATATCTACAAAATTAACTATCGTGAAGGGGAACGTACAAAGACTTTCTGCTAAGAATAATGAGTTGAGGTTACAAATTTCAAGCATGCAACAACATATTCAATTGCAACGTGCATTCAATAATGCAGTAAAAGAGGAAATTCAACATCTAAAAGTAATGACGGGAGAAACTATAATGGGTGGAGGACCTATGAACTTTGTTGCATTTGGAAGGGGGCAACAATACTATCCCAACAATCAGGCAATGCATGCTCTTTTCGCTGAACGACATTTACAACAACTTCAAAATCATTCCCAAAGGTTAAAGCAGAAACTTCGTCAGTATGAACTACAGCAGCAACAACAACAACAACAACAACCACAACCACAACAAGAGGAGGGGGAAGAGAAACATTAA 1092 0.4167 MDNNKPSYVTSTPTLDMKSKQLPPTSSSSSSSSSLHPPPPILDTTPRAGRFSHDISGMPNNRIRNTGHRRAQSEILTLPDNINIDVDLDTIGDLSFSDGTTEEDLLPAYLDVDNIKPSSQAPGSTNNIDIAIGTTDTNESLKVGHERSLSMNGSTSIIKPNMLFSSSVSDSTINSRKGMSALKLEELALVDSKRAKRLRANRQYAMRSRARKARYIFELEKRVQTLKIEATSISTKLTIVKGNVQRLSAKNNELRLQISSMQQHIQLQRAFNNAVKEEIQHLKVMTGETIMGGGPMNFVAFGRGQQYYPNNQAMHALFAERHLQQLQNHSQRLKQKLRQYELQQQQQQQQQPQPQQEEGEEKH. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03467 363 CDD bZIP_plant_RF2 194 238 IPR044759 GO:0003700|GO:0006355
Seca3g03467 363 Pfam bZIP transcription factor 193 251 IPR004827 GO:0003700|GO:0006355
Seca3g03467 363 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 18 359 - -
Seca3g03467 363 SMART brlzneu 189 253 IPR004827 GO:0003700|GO:0006355
Seca3g03467 363 MobiDBLite consensus disorder prediction 329 363 - -
Seca3g03467 363 Gene3D - 193 246 - -
Seca3g03467 363 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 191 254 IPR004827 GO:0003700|GO:0006355
Seca3g03467 363 MobiDBLite consensus disorder prediction 329 355 - -
Seca3g03467 363 MobiDBLite consensus disorder prediction 1 65 - -
Seca3g03467 363 MobiDBLite consensus disorder prediction 1 38 - -
Seca3g03467 363 Coils Coil 244 264 - -
Seca3g03467 363 Coils Coil 316 350 - -
Seca3g03467 363 SUPERFAMILY Leucine zipper domain 193 245 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03467 Seca-Chr3 62259078 62261302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03467 33 319 bZIP Transcription Factor Family AT1G06070 47.541 4.89e-86 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca3g03467 bZIP_1 9.7e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03467 - - pcin:129313665 281.182