Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03465 ATGCCGATTCCAACGAAATTAACGAGGCCGGGTCAGGAAGGCGGCAGGGACTCCGACGAGTCGGCGGCGACTCCGTCGAACAACCTATGGGTCGGGAATCTGGCGACGGACGTTACGGACTCCGATCTTATGGACCTGTTCGCTCAATACGGCGCCCTCGACAGCGTCACCTCCTATTCCGCTCGCAGTTACGGCTTCGTGTTCTTCAAGCGCGTCGAAGATGCCAAGGCTGCTAAGAACGCTCTCCAAGGCTTCTCTCTCCGCGGCAGTTCCTTGAAAATTGAGTTTGCCAGACCGGCAAAGCCATGTAAGCAACTTTGGGTGGGTGGCATTAGCCCAGCTGTTACAAAGGAAGACTTGGAAGCTGAATTTCGTAAATTTGGTAAAATTGAGGAATTCAAGTTCTTCAGAGACCGAAATACTGCATGTGTTGAATTTATCAATCTCGACGATGCTGCTCAGGCAATGAAAATCATGAATGGGAAACGTATAGGTGGGGAGCATATTCGTGTTGACTTCCTCCGGTCACATTCTACAAAAAAATTTCAAGGTAAAAGCTCGGGGCCTACTGATTCCTATTCTGGACAGAAAAGACCATTGCATTCACAAACTTTGATGGGGAGAAAGGGCGATGGTCAACCCAGTAATATTTTATGGATTGGTTATCCTCCTGGTGTTCAAATTGATGAGCAAATGCTCCACAATGCTATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCAAGGAACTATTCATTTGTTGAGTTTAGAAGTGTTGATGAAGCTCGACGAGCAAAAGAGGGCCTTCAAGGACGCCTTTTTAATGATCCTCGAATAACGATTATGTATTCAAGCAGTGACCTAGTACCTGGCAAAGATTACCCTGGCTTTTATCCTGGAAGTAATGGGCCAAGACCTGACGTATTCCTGAATGAGCATCCATTCCCACCATTACAAATGGATTTGTTTGGTCATAATCGTCCAATGGTTCCAAATAATTTTCCTGGACAGTTACCATCTACCGGTATTGTTAGCCCAAACACAGCGATGCGGCCTTTTGGGCCTCAAGGTGGTCTTGAATCTGTTGTTTCTGGCCCTGAGTTTAATGAGATCAGCTCCACGGGTAAGATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGATGCTTTCTTCTCCTGCACCGGGTGTTAGGCTTCCTACAAGGTCAGCCTCTGGTGCATGGGATGTACTTGACATAAACCATATTCCAAGAGATCCTAAACGGTCAAGGATAGATGGTACTTTGCCTGTTGATCATGCTGCATTTCCTTTAAGGAACATAGATGATCGTGCGTTAGCTCTGGAACAAACATATGGGATTGATCCAGTTATTGATGGAGGTGGTTCTGGTCCATATGTAAACATTCAAGGAAAGAATCACCTTGGTCCAGCGAGCACAAGGATTACAGCTGGAGTACATGGTTCTGTCCAAGCTGATGTTGATCATATATGGCGTGGAATTATTGCAAAAGGAGGAACTCCTGTTTGTCGTGCTAGATGTGTTCCTATTGGGAAAGGGATTGGGACTGAGCTTCCTGATGTTGTTGATTGTTCAGCTAGGACGGGATTGGATATACTCACGAAACACTATGCTGATGCAATTGGTTTTGACATTGTTTTCTTTCTGCCTGATAGTGAAGATGATTTTGCTTCATACACTGAATTTCTTCGCTACCTTGGTGCAAAAAATCGTGCTGGTGTTGCTAAATTTGTTGATAACACCACCTTATTCTTGGTACCTCCTTCTGATTTTCTGACAAAAGTTTTGAAAGTCAATGGACCTGAACGTCTATATGGTGTGGTTCTTAAGTTTCCACCAGTGCCAAGTAGTGCACCCATGCAACAATCATCACATTTGCCTATACCGACAACTCAGTATATGCAGCAGATTCCTCCTTCACAGGCTGAATATGGTATGATTCCTGCAAAGGAGGAACGGATTTCGCCAATGGATTACAACAGGTCATTGCATGAGGATTCTAAGCTTCCTGCTAAACCAGTCTATCCAGCTACAGGTGGGCCCCCTTCAGTTCAGTCTGTGCCTCCAGATTATGCTCCTAATACTACTGCTTCTGGGTCCCAAGCTGGAATTGGATTAACACCTGAGCTTATTGCAACTTTAACTTCTTTACTACCTGCCACCGCACAATCATCTGCCACTGATGGTGCCAAATCAGCAGTAGGTTCCTCGACTGTAAAGCCTCCGTTTCCTCCTGTGGCACCTAATGATGGAAACCATTCTCAATTATGGAAACAGGATCATCAAACTGCAGATCAGTCCATTCATCCTCCTCAACAGTTGAGGAATATGTATAACATTAACAATGCTCATTATCAGCCTTATCCACCAACATCAGCTCCTGGTCACACTGCTCATGGCAGTTCTCATATACAAGACCATGCTGTCAGCCTGCAGCAGCAAGGCGCTGTTTCATCTAGACACATGTCTAATTTCGTCGTACCAACTCAAAGTGGACAGGTAGCTGGATCCTCCCATGTCAATCAGCAGTATCAGGTTGAAGTCTCACCTAGTACTCAGAAAAGTTTTGGAGTGGTGCAAGGAACTGATGCCTCTGTTTTATACAATTCTCAGGCTTTCCAGCAACTCAATAACAATTCTCAGCCTTTCCAGCAACCTAATAATTCTATTGCCATATCTAATCAAGTTAACAGTGCTAATCCTTCACAGCAACAATCTGCCATGCCATATACAGTGGACCATCAAATAAACCCAGACCCGCATAATCAGCAACTTCCTGTCTTTGGAGTAGGTCAAGGGACATCAGAAGTTGAGGCTGATAAGAATCAGAGATACCAGTCAACATTACAGTTTGCTGCCAATCTTCTCTTCCAAATACAGCAGCAGCAGCAAACCCAAGGAGGACACGGGCCGGGAGTTCAACAATGA 2964 0.4504 MPIPTKLTRPGQEGGRDSDESAATPSNNLWVGNLATDVTDSDLMDLFAQYGALDSVTSYSARSYGFVFFKRVEDAKAAKNALQGFSLRGSSLKIEFARPAKPCKQLWVGGISPAVTKEDLEAEFRKFGKIEEFKFFRDRNTACVEFINLDDAAQAMKIMNGKRIGGEHIRVDFLRSHSTKKFQGKSSGPTDSYSGQKRPLHSQTLMGRKGDGQPSNILWIGYPPGVQIDEQMLHNAMILFGEIERIKSFPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSDLVPGKDYPGFYPGSNGPRPDVFLNEHPFPPLQMDLFGHNRPMVPNNFPGQLPSTGIVSPNTAMRPFGPQGGLESVVSGPEFNEISSTGKMGPNWKRPSPPAPGMLSSPAPGVRLPTRSASGAWDVLDINHIPRDPKRSRIDGTLPVDHAAFPLRNIDDRALALEQTYGIDPVIDGGGSGPYVNIQGKNHLGPASTRITAGVHGSVQADVDHIWRGIIAKGGTPVCRARCVPIGKGIGTELPDVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFVDNTTLFLVPPSDFLTKVLKVNGPERLYGVVLKFPPVPSSAPMQQSSHLPIPTTQYMQQIPPSQAEYGMIPAKEERISPMDYNRSLHEDSKLPAKPVYPATGGPPSVQSVPPDYAPNTTASGSQAGIGLTPELIATLTSLLPATAQSSATDGAKSAVGSSTVKPPFPPVAPNDGNHSQLWKQDHQTADQSIHPPQQLRNMYNINNAHYQPYPPTSAPGHTAHGSSHIQDHAVSLQQQGAVSSRHMSNFVVPTQSGQVAGSSHVNQQYQVEVSPSTQKSFGVVQGTDASVLYNSQAFQQLNNNSQPFQQPNNSIAISNQVNSANPSQQQSAMPYTVDHQINPDPHNQQLPVFGVGQGTSEVEADKNQRYQSTLQFAANLLFQIQQQQQTQGGHGPGVQQ. 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03465 987 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 176 IPR000504 GO:0003723
Seca3g03465 987 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 99 IPR000504 GO:0003723
Seca3g03465 987 PANTHER RNA RECOGNITION MOTIF-CONTAINING 25 97 - -
Seca3g03465 987 FunFam Flowering time control protein FPA 19 101 - -
Seca3g03465 987 MobiDBLite consensus disorder prediction 678 712 - -
Seca3g03465 987 CDD RRM_SF 29 95 - -
Seca3g03465 987 Pfam SPOC domain 498 616 IPR012921 -
Seca3g03465 987 MobiDBLite consensus disorder prediction 764 779 - -
Seca3g03465 987 Gene3D - 103 208 IPR012677 -
Seca3g03465 987 SUPERFAMILY RNA-binding domain, RBD 103 286 IPR035979 GO:0003676
Seca3g03465 987 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 289 IPR000504 GO:0003723
Seca3g03465 987 MobiDBLite consensus disorder prediction 1 26 - -
Seca3g03465 987 MobiDBLite consensus disorder prediction 794 817 - -
Seca3g03465 987 MobiDBLite consensus disorder prediction 180 201 - -
Seca3g03465 987 Gene3D - 209 293 IPR012677 -
Seca3g03465 987 MobiDBLite consensus disorder prediction 740 779 - -
Seca3g03465 987 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
Seca3g03465 987 FunFam flowering time control protein FPA 209 302 - -
Seca3g03465 987 CDD RRM_SF 106 172 - -
Seca3g03465 987 Gene3D - 5 102 IPR012677 -
Seca3g03465 987 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 92 IPR000504 GO:0003723
Seca3g03465 987 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 282 IPR000504 GO:0003723
Seca3g03465 987 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 169 IPR000504 GO:0003723
Seca3g03465 987 SMART rrm1_1 105 172 IPR000504 GO:0003723
Seca3g03465 987 SMART rrm1_1 217 285 IPR000504 GO:0003723
Seca3g03465 987 SMART rrm1_1 28 95 IPR000504 GO:0003723
Seca3g03465 987 MobiDBLite consensus disorder prediction 179 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03465 Seca-Chr3 62201113 62209236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03465 28 279 Eukaryotic Initiation Factors Gene Family AT2G23350 25.000 1.52e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03465 - - gmx:100777570 1642.48