Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03460 ATGGTTTCAATCCTCAAATTTCGTACCATCTTCTACACACTAGAAGCCACAAATCGACAAATATATGGTGCCCTTAGATATTTTCATTCTGGGTCTGAATGGGTTCACAAGGGTTTGGATAAAAATCTAAACTTGGCACCAAACGAAAAGCAAAAGAGGGTGGGGCTTTTCTGGGACTTGGACAATAAACCACCCAATTCAATCCCCCCTTATGAAGTTGCCAATAAACTGAGAATAGCTGCATCTTCCTTTGGGGTTGTTCGGTATATGGTGGCTTATGCAAATAGCCACACTTTTAGCCATGTCCCCCAAGCTGTTAAGGAGAGGAGGAAAGAGAGGGCACTGTTGAATCGTTTAGAGAACAAGGGTGTCATCAAGCCAAATGAGCCTTATCTTTGTAGAGTTTGTGGGAGAAAATTTTATACTAATGAAAAGCTTGTTAACCATTTCAAGCAACTGCATGAGCGTGAGCACATGAAAAGGATGAACCAGATAGAGTCAGCTAAAGGGAACAGGAAGGTGAAGTTGGTGGCTAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAATACTATTCTGACTCCTAAAGTGGGGTATGGTTTGGCAGATGAACTAAAACGGGCAGGGTTTTGGGTTCAAACTGTGTTGGATAAGCCACAAGCTGCAGATCGTGCTTTGCAAAATCACATGGTGGATATCATGGATCATAGGAGGGTTGATTGTGTGGTACTTGTATCTGATGATTCTGATTTTGTTGATGTAATAAAGGAAGCAAAGCTACGGTGTCTCAAGACTGTTGTCATTGGTGATACTACTGATGATGGAGTCCTGAAGAGGACTGCCGATGCTGCATTTTCTTGGGAGGAAATTCTGATGGGGAAGGCTAAAAAAGAGGCTGTATCAGTTGTGGAAAACTGGAAGGATCGTGATATCTTAAAAAGGTTAGAGTGGACATACAACCCAGAAGTAGATAAAAAGAAATCCAATCTAAATGATAAGGTTACTGAAAAATCTGAATATGAAGATATGGAAGATATCTGTGATGAAGTTGATGATGACTATAAGGATGACAGAGGTTCTTGGTGGGAATTAGATTCTGATGACAATGTCACAACTAGAGGCAAGTTATCCATTGTATCTGTGAGTAGATGA 1158 0.405 MVSILKFRTIFYTLEATNRQIYGALRYFHSGSEWVHKGLDKNLNLAPNEKQKRVGLFWDLDNKPPNSIPPYEVANKLRIAASSFGVVRYMVAYANSHTFSHVPQAVKERRKERALLNRLENKGVIKPNEPYLCRVCGRKFYTNEKLVNHFKQLHEREHMKRMNQIESAKGNRKVKLVAKYSMKMEKYKKAANTILTPKVGYGLADELKRAGFWVQTVLDKPQAADRALQNHMVDIMDHRRVDCVVLVSDDSDFVDVIKEAKLRCLKTVVIGDTTDDGVLKRTADAAFSWEEILMGKAKKEAVSVVENWKDRDILKRLEWTYNPEVDKKKSNLNDKVTEKSEYEDMEDICDEVDDDYKDDRGSWWELDSDDNVTTRGKLSIVSVSR. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03460 385 SUPERFAMILY beta-beta-alpha zinc fingers 127 157 IPR036236 -
Seca3g03460 385 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 46 372 - -
Seca3g03460 385 CDD PIN_LabA-like 141 272 - -
Seca3g03460 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 159 IPR013087 -
Seca3g03460 385 Coils Coil 102 122 - -
Seca3g03460 385 ProSitePatterns Zinc finger C2H2 type domain signature. 133 154 IPR013087 -
Seca3g03460 385 Gene3D - 44 293 - -
Seca3g03460 385 Pfam NYN domain 203 284 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03460 Seca-Chr3 62123070 62124227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03460 53 374 C2H2 Transcription Factor Family AT4G12240 61.491 2.15e-146 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g03460 NYN 5.2e-08 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03460 - - lja:Lj3g3v3326020.1 629.402