Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03455 ATGGACATAATGAGTCTTTACATGGCAAAGAAAACACACTACAACATCTTCTCCAATCAGCAGTATATTGGTCATGAAGCAGCAGCCATAGACAATCATCTCCAAAATAGTCACACAGCCACAAGCCATACTTCAGACTCCAGTGAGCCTTGTGAGAATGGTAAATGGGCTTCCAAGCTTCTTAGAGAGTGTGCCAGAGCAATCTCTGATAGGGACTCTGCCAAAATTCACCATCTTCTATGGATGTTGAATGAGCTTGCTTCCCCCTATGGAGACTGTGAACAAAAATTAGCCTCCTACTTTTTGCAAGCTCTGTTTTGTAAGGCAACATGCTCTGGCCAAAGGTCCTACAAGACCCTAACCTCAGTGGCTGAGAAAAGTAACTCCTTTGATGCAGCTAGAAAGTTAATACTCAAGTTCCAAGAGGTAAGTCCTTGGACAACTTTTGGACATGTGGCTTCAAATGGTGCCATTTTGGAAGCCTTAGAAGGGGAGACTAAACTCATCCACATAATTGATCTAAGCAACACCCTTTGCACTCAGTGGCCTACTCTGTTGGAAGCCTTGGCTACAAGAAATGATATTGAAACCCCTCACTTGAAGCTCACTGTTGTTGCTTTAACTGGTAGCATAGTAGGATCTGTTATGAAGCAAGTTGGTCAAAGAATGGAGAAGTTTGCTAGACTTATGGGGGTGCCCTTTGAGTTTAATGCAATATATGGGGTAGATCATCTAGGGGAGCTAACAAAAGAAAGGTTAGGAGTTCAAGAGGGGGAGAGTATTGTTGTGAATTGTGTTGGGGCATTGAGAAGAGTGGAAGAGGAAAAGAGGGGAACAGTGATTGGCATGTTGAAATCACTTAATCCTAGAGTTGTGACAGTTGTGGAGGAGGAAGCTGACTTTTGTAGCTCAAAAAATGACTTTGTCAAAAGCTTTGAAGAGTGTCTAAGGTTTTACACACTTTACTTTGAGATGTTAGAGGAGAGCTTCCCCCCAATAAGTAATGAGCAATTGATGCTAGAGAGGGAGTGCTCAAAAAGCATACTTGGGGTTTTAGCTTGTAGTGGTGATGAATTAGTAGGAGATCATGATGGTGAGAGAAGGGAGAGAGGGATCCAGTGGAGTAGGAGGCTTAAAGAGGAGGCATTTTCTCCAGTTGGGTTCAGTGATGATGTTGTGGATGATGTGAAGGCATTGCTTAAGAGGTACCATACAGGGTGGTCACTTGTGGTGCCACAAGGAGATGATTATCTCTCAGGAATTTACTTGACATGGAAGGAGGAATCTGTAGTTTGGGCATCAGCATGGAAACCCTAA 1317 0.432 MDIMSLYMAKKTHYNIFSNQQYIGHEAAAIDNHLQNSHTATSHTSDSSEPCENGKWASKLLRECARAISDRDSAKIHHLLWMLNELASPYGDCEQKLASYFLQALFCKATCSGQRSYKTLTSVAEKSNSFDAARKLILKFQEVSPWTTFGHVASNGAILEALEGETKLIHIIDLSNTLCTQWPTLLEALATRNDIETPHLKLTVVALTGSIVGSVMKQVGQRMEKFARLMGVPFEFNAIYGVDHLGELTKERLGVQEGESIVVNCVGALRRVEEEKRGTVIGMLKSLNPRVVTVVEEEADFCSSKNDFVKSFEECLRFYTLYFEMLEESFPPISNEQLMLERECSKSILGVLACSGDELVGDHDGERRERGIQWSRRLKEEAFSPVGFSDDVVDDVKALLKRYHTGWSLVVPQGDDYLSGIYLTWKEESVVWASAWKP. 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03455 438 Pfam GRAS domain family 59 437 IPR005202 -
Seca3g03455 438 ProSiteProfiles GRAS family profile. 48 437 IPR005202 -
Seca3g03455 438 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 56 427 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03455 Seca-Chr3 62066664 62067980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03455 32 438 GRAS Transcription Factor Family AT4G37650 51.300 2.45e-143 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca3g03455 GRAS 3e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03455 - - csin:114310015 629.787