Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03448 ATGGAAGACCACCTTTCCCCTAAGGGAAAAGGAATTAGCTATTGGACACCGTTGGATGGTGGAATGAAAAATTCAGCCCCGGAGGATATGTTTAACAATTTCTCTGAGCTCATGAACTTTGATAACTATGCTGGTTGGTGCAATGGCTCATCGATGACTGATCAGAGTTTGGCTAACGGGCTTTCATCGTTTGCCTCAGTACCATATCCACCATCTGATGGATTGAATTTGATGGAACAGAGCAATAGTCCATTCTTTATGACAGAAGTTAGTGGAAATTACAATGCTATGGTAAGCTCCCCCAGTTATGGGGAGAGAGGTATATTACAGCAAATGGAATCCCAACTAGGGTTCTCAGATGATGCAAATGATACAAATAACTTAGATTCAAAACAAAAACAAAATGGCTCATTTCAACAACTTAATTCCTCAGAAGTGGGTAATTATATCATTCCCAGGCCATTTGGTTGGTCCCTTGATGAGAGAATGCTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTACCCATGAAGCATGGTGATGAATTCATCTTAAGCACAAGTGAGCAACCTTATTTGCTAGACCATAAGCTTGCAGGATATCGTGAAGTGTCAAGGACATTTACATTCTCTGCAGAAGGAAAAGGAGGCTCTTGTCCAGGGCTTCCGGGTCGCGTGTTTATCTCCCATGTTCCTGAATGGACCTCCAATGTTGGTTACTACCATAAAACTGAGTACTTGAGGTTGGAGCATGCAATTAATCATGAGGTTCGTGGATCAATTGCTCTTCCCATATCTGATCCACACTCTGAACTGCCATGTAGTGCTGTACTGGAACTTATCACAACAAAGGAAAAGCCTGATTTTGACAGGGAATTAGAAATTGTTTCTAATGCGCTCCAGCATGTAAATTTAAGGACTATTATGCATCCACGACTTCTTCCCCAGTGGCTATCAAATAACAAAAAAGCTGCTTTAACAGAGATAATTGATGTGTTACGAGCTGTGTGTCATGCACATAGATTGCCACTGGCACTGACATGGATTCCCTGTTGTTACAGTGAGGGAATAGGAAATGAAACTGGGAGAATAAGAATTAAAGAGGGTCATACAAGTTCTAATGAAAAATGCGTACTATGTATTGAAGAATCAGCTTGCTATATAAATGATAAAGAGGTAGGAGGATTTGTTCATGCATGCGCTGAACATCATCTTGAGGAAGGGCAAGGTTTAGCTGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTATACTGATGTGAAGGCTTATGATATTAGTGAATATCCCCTTGTTCATCATGCACGCAAATATAATTTGAATGCTGCGGTTGCAATTAGGCTAAGGAGTACATACACTAATGATGATGATTACATATTAGAATTCTTTCTGCCTGTCAATATGACAGGGAGTTCAGAACAGCAACTTTTATTAGACAATCTATCAGGTACTATGCAGAGAATTTGTAGGAGTTTGAGGACAGTTTCAGATGCTGAATTAACAGGGATAGAAGCCTCCCAAGTTGGGTTTCAAAAGGAAAAAGTCCTAGGTTTTCTTCCTATGTCCAGTAGAAACTCTCAGATAGTATTCACAAGGGGTGACCATGATTCAGTCCAGGAGATGTCCTTGAAGGCAACTAACCTGAGAAATAATGGAATTGGAGCTGCTCATAGCCAGGAAATGAATGGATCAAGAAAGCAGGTTGAGAAAAAGAGAAGTACAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCGAAAAGCATTGGAGTTTGCCCAACAACTCTAAAAAGGATATGCAGGCAACATGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTAAATCGTTCATTAAAGAAAATACAGACTGTGCTTGACTCTGTCCAGGGAGTGGAAGGAGGGCTGAAGTTTGATCCTTATACTGGGGAGTTTGTGGCAGGAGGATCAATCATCCAAGAAGTTGATGCACATAAAAGTCTTCTGTTCCCTGAGAAAACTTCTGTGAAAGACCCTAAGCGTGTAACACAAGAAGCAGTCTCAGTACCTCCAGCACATGGTAATGCAGGTGAGAATTCAGCCATTAAGTTGGAGGAGGATGGTGCTTGTTTGGTAGGGAACCAGCTTATGCACTCAAGAAGTGTGCTTGTCTCTAATCCCTGTGAAGGAGAATTGAAAAAAGACAATGCTTCTTCTGTTGATTGTAGTGAAGATTCAAAATCAATGGCCATGGATGATGGATCATGCCACACAGCCTGTCTTGGGACCAAGGCTCAGGATTGTCCTAAACAAACCTCTCTGGAAGGGGATCAATGGGGTTTGAACAAGAGCAGCTCTGGAGTAGAAAATTCTACCCGTGATATTGTCTCTAATAGTTCAATCTCCTTGATTGAACTTGGATTGAATAGGGGCAATGATGCTGAACACAACCACCCCACTTCATCAGGCATGACAGACTCAACCAATGAATCTGGCTCAATGATGCGTGGCAGTTCATCAGGCTCTCAGAGTCACAGCTTTGAGAACCAGAAGCACTCGAAAGTCAAATCAGCTTGTGTTGATAGTGGGTCAAAAATTGTTGTCAAAGCTACCTATGGAGGAGATACTATTCGTTTCAAGTTTGATCCATCTGCGGGTTGTTTCCATCTATATGAAGAAGTTGCAACAAGGTTCAAATTACAAAATGGGTCATTCCAGCTAAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCAGATTTGCAAGAATGTGTAGAAATTTTGGGTGATATTGGCACACATTGTGTGAAGTTTCTTGTTCGTGATATGCCTAGCGTTTTAAGGAGCCGTGGCAGTAACAACTGCTTCTTATCAGACAGCTCATAG 2955 0.4149 MEDHLSPKGKGISYWTPLDGGMKNSAPEDMFNNFSELMNFDNYAGWCNGSSMTDQSLANGLSSFASVPYPPSDGLNLMEQSNSPFFMTEVSGNYNAMVSSPSYGERGILQQMESQLGFSDDANDTNNLDSKQKQNGSFQQLNSSEVGNYIIPRPFGWSLDERMLRALSFFKESAGGGILAQVWVPMKHGDEFILSTSEQPYLLDHKLAGYREVSRTFTFSAEGKGGSCPGLPGRVFISHVPEWTSNVGYYHKTEYLRLEHAINHEVRGSIALPISDPHSELPCSAVLELITTKEKPDFDRELEIVSNALQHVNLRTIMHPRLLPQWLSNNKKAALTEIIDVLRAVCHAHRLPLALTWIPCCYSEGIGNETGRIRIKEGHTSSNEKCVLCIEESACYINDKEVGGFVHACAEHHLEEGQGLAGKALQSNHPFFYTDVKAYDISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMTGSSEQQLLLDNLSGTMQRICRSLRTVSDAELTGIEASQVGFQKEKVLGFLPMSSRNSQIVFTRGDHDSVQEMSLKATNLRNNGIGAAHSQEMNGSRKQVEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGEFVAGGSIIQEVDAHKSLLFPEKTSVKDPKRVTQEAVSVPPAHGNAGENSAIKLEEDGACLVGNQLMHSRSVLVSNPCEGELKKDNASSVDCSEDSKSMAMDDGSCHTACLGTKAQDCPKQTSLEGDQWGLNKSSSGVENSTRDIVSNSSISLIELGLNRGNDAEHNHPTSSGMTDSTNESGSMMRGSSSGSQSHSFENQKHSKVKSACVDSGSKIVVKATYGGDTIRFKFDPSAGCFHLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECVEILGDIGTHCVKFLVRDMPSVLRSRGSNNCFLSDSS. 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03448 984 Gene3D - 880 960 - -
Seca3g03448 984 ProSiteProfiles RWP-RK domain profile. 573 661 IPR003035 -
Seca3g03448 984 SMART PB1_new 884 966 IPR000270 GO:0005515
Seca3g03448 984 SUPERFAMILY CAD & PB1 domains 880 968 - -
Seca3g03448 984 Pfam PB1 domain 886 965 IPR000270 GO:0005515
Seca3g03448 984 ProSiteProfiles PB1 domain profile. 884 966 IPR000270 GO:0005515
Seca3g03448 984 CDD PB1_NLP 887 965 IPR034891 -
Seca3g03448 984 MobiDBLite consensus disorder prediction 833 867 - -
Seca3g03448 984 MobiDBLite consensus disorder prediction 829 868 - -
Seca3g03448 984 Pfam RWP-RK domain 593 641 IPR003035 -
Seca3g03448 984 PANTHER PROTEIN NLP8 110 974 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03448 Seca-Chr3 61882082 61888327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03448 1 980 NLP Transcription Factor Family AT2G43500 48.776 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Seca3g03448 PB1 5.5e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03448 - - aprc:113864503 1555.81