Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03442 ATGGGTAACTCATTGCAATCACTACAGAGACATGGGGAAGAGGATGAGGGCGTTAATGCCATTGAGGAACAGCTAATTAGAGAGGGAACGTGTGAAATCTGCATTGAACTCTTCACTCCAGAAACACTTTTTCAGAATAACAATCTATGTGTGCACCCTTTTTGTGTGGAATGCATAGCCACATATATAGAGACGAAAATAGGCGAGAATGTGGGGAAAATCCCATGCCCTGCCCTGGACTGCGAAAACCAACTGGATCCTGTGTTTTGTAGTTCAATCATCTCGAAACAATTGTTTGATAAATGGTGCGATGCTCTTTGCAATTCAGCAGTTTTAGAGTTCCAAAACCGAACATATTGCCCGAATCAACTATGCTCTGCCTTGGTTATCAACGAATGTGATGACAAATCTGTGAAGGAAGTTATGTGTCCCAATTGCAAGCAGTATTTCTGCTTCAAGTGCCAAATTCCTTGGCATACAGGGTATAGGTGCCATGAGGTTGGACAGTTCAGGGATAGGAATGATGTTCTGTTTGGGCAATTAGCAGAGAGAAGGAGATGGAGTAGATGTTATAGATGTGGTGAATGTATCGAGCGTGTTGGAGGTTGCAGAGTCGTTCATTGCAGATGTGGTGCCTATCATTGTTTCGAATGTGGAAGACCTGCTCATTTTGGTCCTTGCAGAATGAACAACGTAATACTACAGATCCGTACATGGCAGATTATTATTTTAGTAGGGTTTTTCACAATGATTGCCACAATAGTTGGGGGGACAGTTTTATATTTTTTAGCTAGATTATGA 801 0.4182 MGNSLQSLQRHGEEDEGVNAIEEQLIREGTCEICIELFTPETLFQNNNLCVHPFCVECIATYIETKIGENVGKIPCPALDCENQLDPVFCSSIISKQLFDKWCDALCNSAVLEFQNRTYCPNQLCSALVINECDDKSVKEVMCPNCKQYFCFKCQIPWHTGYRCHEVGQFRDRNDVLFGQLAERRRWSRCYRCGECIERVGGCRVVHCRCGAYHCFECGRPAHFGPCRMNNVILQIRTWQIIILVGFFTMIATIVGGTVLYFLARL. 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03442 266 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Seca3g03442 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 113 IPR013083 -
Seca3g03442 266 ProSiteProfiles Zinc finger RING-type profile. 31 77 IPR001841 -
Seca3g03442 266 Gene3D - 179 232 - -
Seca3g03442 266 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 22 223 IPR031127 GO:0004842|GO:0016567
Seca3g03442 266 SMART ibrneu5 100 164 IPR002867 GO:0008270
Seca3g03442 266 FunFam RBR-type E3 ubiquitin transferase 26 113 - -
Seca3g03442 266 SUPERFAMILY RING/U-box 100 167 - -
Seca3g03442 266 Pfam IBR domain, a half RING-finger domain 101 164 IPR002867 GO:0008270
Seca3g03442 266 SUPERFAMILY RING/U-box 174 224 - -
Seca3g03442 266 ProSiteProfiles TRIAD supradomain profile. 27 240 IPR044066 -
Seca3g03442 266 SUPERFAMILY RING/U-box 29 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03442 Seca-Chr3 61802062 61803150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03442 30 221 C3H Transcription Factor Family AT2G19610 25.980 1.57e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03442 K11975 - pop:18104531 268.855