Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03432 ATGGATGACCAGCAATCCTTCTTCGCTATCATCAAGGAAGGCTTGAACACCAAGCACATGAAAGTGCCACCAGAGTTTCATAAGTATTTGGATGAAGAGTTCATGATGATGTCTTGGAGGAAAGCAATTCTTACATGCCCTTCTAATGAGCAGTGGGAAGTGACTATTTTGAAGAAAGGAAATGACATTTATATGGAAGATGGTTGGGCAAAATTTCTGATGGACAACTTAGTGGCCATGGATGAGTTCTTGCTATTCACCTATAATGGAGAGAACCACTTCCAGGTGCAAATTTTTGGTAAGGACGGATGTGAGAGAGTAAACTTCAGACAACATGACACCCCCACCTCGCCGAGGAAAAAGAAAGTTCTGACTCCCAGCAACAATGGCTCACATCCTAAGGCTTACTTCTCAAAGCCCCAGATTTCACCTGAAATTGAAAAACTAGCTCAGTCTTTTACATCTGACAATCCATATTTCACCCACTTCATGACAAAATCAAATGTGGAAAACCCGTTCGTAATGCCTGTTGCTACTAAGTTTGCGAGAAGGTATATTTCTGAAGCGGTAAAAACGATGATCCTTGAGAATTCGGAAGGAAAATATTGGGAAGTGGGAGTGGGTTGTATAGGTACTCCAAACAAAAGGTATTTTCAGTTTACAAGAGGATGGGAAAAATTTGTTCGTGGAAACAAGCTCAAAATAGGTGACCTTTGCATATTTGAACTTATAGGCGGAAACTATATCAGGGTTCACATATTCAGATCATGTGCACCAAATTAA 783 0.4049 MDDQQSFFAIIKEGLNTKHMKVPPEFHKYLDEEFMMMSWRKAILTCPSNEQWEVTILKKGNDIYMEDGWAKFLMDNLVAMDEFLLFTYNGENHFQVQIFGKDGCERVNFRQHDTPTSPRKKKVLTPSNNGSHPKAYFSKPQISPEIEKLAQSFTSDNPYFTHFMTKSNVENPFVMPVATKFARRYISEAVKTMILENSEGKYWEVGVGCIGTPNKRYFQFTRGWEKFVRGNKLKIGDLCIFELIGGNYIRVHIFRSCAPN. 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03432 260 Pfam B3 DNA binding domain 160 255 IPR003340 GO:0003677
Seca3g03432 260 Pfam B3 DNA binding domain 16 101 IPR003340 GO:0003677
Seca3g03432 260 SUPERFAMILY DNA-binding pseudobarrel domain 153 255 IPR015300 -
Seca3g03432 260 CDD B3_DNA 158 255 IPR003340 GO:0003677
Seca3g03432 260 SUPERFAMILY DNA-binding pseudobarrel domain 5 104 IPR015300 -
Seca3g03432 260 Gene3D - 1 104 IPR015300 -
Seca3g03432 260 Gene3D - 139 257 IPR015300 -
Seca3g03432 260 MobiDBLite consensus disorder prediction 112 136 - -
Seca3g03432 260 PANTHER B3 DOMAIN-CONTAINING 5 252 - -
Seca3g03432 260 MobiDBLite consensus disorder prediction 120 136 - -
Seca3g03432 260 ProSiteProfiles B3 DNA-binding domain profile. 5 102 IPR003340 GO:0003677
Seca3g03432 260 ProSiteProfiles B3 DNA-binding domain profile. 160 257 IPR003340 GO:0003677
Seca3g03432 260 SMART B3_2 7 102 IPR003340 GO:0003677
Seca3g03432 260 SMART B3_2 160 257 IPR003340 GO:0003677
Seca3g03432 260 CDD B3_DNA 6 99 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03432 Seca-Chr3 61632176 61633756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03432 7 258 REM Transcription Factor Family AT4G31640 25.379 3.73e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca3g03432 B3 2.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03432 - - aprc:113865156 248.44