Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03431 AAACATGATCATTATGGTGGAAAGCTCCTTCCGCAGTCTTGTATTTCAAGCATTTACAAATATTTGGAACCTAACTTGATTTGTGAATTGCAGAGGCTTCCAGATAATTTTATGAGGAAATATGAGGGTGAGCTTTCTGCCATGGCTACCCTTTCTGTTCCTGATGGTAGTGTCTGGCGTGTAGGATTAAAGAAAGCAGACAACAAATTTTGGTTCCTTGATGGCTGGCAAGACTTTGTTCAACGTTATTCCATTGGTGTTGGATACTTGTTGGTATTCAGATACGAAGGAAAGTCATCTTTCAATGTTCATATTTTTAATTTGGCTACATCTGAGATAAACTATATAACCACCACACGAAGCAGTAATGAAGGACCTTACTTTGGAAGTCGTCTTAAGATTTTTGAAGAAATGGAAGATGAAGATTCCATTGAAACCTTGGATTCGTCACCTTCCAACCTTACTCCTGGTACATTGCAAGACAAAGCTATTGCTGGATCAGTAGATAATTTGACACCTGGCAAGAATCGTTCGCCTCCAGCATCACAGAATCTGTTTAATGGATCTAAACTTAATAACATAAACTGGGGAGAGGGTGGGAATGCCCTTTCTTCAAAAAGTGCCAATTCACTAGAAAATCAGCTGACCAAAAATATAGGTGTCCAATTTAATGCAGCTGAGTATAAAAGATCTACTGAAGAATTGAAATTGCGTGCATCTATGGAGGAAAAGGCTAAAAAAGCTGTGATAAAGAAGCGGAAATCAGATGACCAGGAAGCTTCTGCTGAAAATGAAGAAGAGGTGGAAATGCGCTATAGATTTTATGAAAGTGCATCTGCAAGAAAAAGAACTGTGACAGAGGAAGAAAGAGAAAAGGCCGTCAATGCAGCAAAAGCATTTGAACCACCTAATCCTTTCTGTCGGGTTGTCCTGCGGCCATCCTATTTATACAGGGGATGCATAATGTATTTGCCATCCTGCTTTGCAGAAAAGCATTTGAATGAGGTTTCAGGATTTATTAAACTTCAAATCTCTGATGGGAGAGAGTGGCCTGTTCGCTGCCTTTATAGAGGAGGTAGAGCTAAGTTAAGCCAGGGGTGGTTTGAATTTGCATTAGAGAACAATTTAGGTGAAGGTGATGTCTGTGTGTTTGAGCTGCTTAAAGTGAAAGATGTAGTGCTGCAAGTTACTATTTTTCGTGTCACTGAGGATGTGGGATTGTCTAGCCCTTCTTCACAGAAGAACCAAAATGTGAACTCAGCAAACATGTCAAACACTCCCTTGCAGCATGACCATACTTCAACTTAA 1308 0.3991 KHDHYGGKLLPQSCISSIYKYLEPNLICELQRLPDNFMRKYEGELSAMATLSVPDGSVWRVGLKKADNKFWFLDGWQDFVQRYSIGVGYLLVFRYEGKSSFNVHIFNLATSEINYITTTRSSNEGPYFGSRLKIFEEMEDEDSIETLDSSPSNLTPGTLQDKAIAGSVDNLTPGKNRSPPASQNLFNGSKLNNINWGEGGNALSSKSANSLENQLTKNIGVQFNAAEYKRSTEELKLRASMEEKAKKAVIKKRKSDDQEASAENEEEVEMRYRFYESASARKRTVTEEEREKAVNAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNEVSGFIKLQISDGREWPVRCLYRGGRAKLSQGWFEFALENNLGEGDVCVFELLKVKDVVLQVTIFRVTEDVGLSSPSSQKNQNVNSANMSNTPLQHDHTST. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03431 435 MobiDBLite consensus disorder prediction 171 188 - -
Seca3g03431 435 CDD B3_DNA 305 400 IPR003340 GO:0003677
Seca3g03431 435 SMART B3_2 18 109 IPR003340 GO:0003677
Seca3g03431 435 SMART B3_2 307 402 IPR003340 GO:0003677
Seca3g03431 435 ProSiteProfiles B3 DNA-binding domain profile. 307 402 IPR003340 GO:0003677
Seca3g03431 435 MobiDBLite consensus disorder prediction 407 435 - -
Seca3g03431 435 Gene3D - 284 405 IPR015300 -
Seca3g03431 435 SUPERFAMILY DNA-binding pseudobarrel domain 300 401 IPR015300 -
Seca3g03431 435 ProSiteProfiles B3 DNA-binding domain profile. 33 109 IPR003340 GO:0003677
Seca3g03431 435 Gene3D - 16 109 IPR015300 -
Seca3g03431 435 Pfam B3 DNA binding domain 32 106 IPR003340 GO:0003677
Seca3g03431 435 Pfam B3 DNA binding domain 310 401 IPR003340 GO:0003677
Seca3g03431 435 CDD B3_DNA 32 107 IPR003340 GO:0003677
Seca3g03431 435 MobiDBLite consensus disorder prediction 167 188 - -
Seca3g03431 435 SUPERFAMILY DNA-binding pseudobarrel domain 17 107 IPR015300 -
Seca3g03431 435 PANTHER B3 DOMAIN-CONTAINING 23 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03431 Seca-Chr3 61603185 61605099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03431 32 406 B3 DNA Binding Superfamily AT3G18990 50.263 8.17e-120 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca3g03431 B3 4.2e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03431 - - gmx:100813285 639.417