Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03430 ATGACTAACGCAGCTGAGAAGATCCCTGATTTCTTCAAAGTCTTCCTTCCAGAACGACACTCTGAAGGAATGTTTATCCCAAAAGTGAAGTTGAAACTCTTTGAAGAAAATGTAATTAAGGTTGTCATCCTTAGAAATCGTAGTGGAAGAATTTGGCATGTCAAAGTTCGTCGTCCTATTAATGGTCAATTATGTTTTGAGGATGGTTGGAAGCGTTTCCGAGAAGAAAATTCTTTAAAGGCTGCTGATTTTTTAGTTTTTACATATTTGGGGAACAATGAGTTCAATGTTAAAATCCTTGAACGATCATCCAAGTGTGAAAAGATAATGGATGGGAATGAACTTGGAGAAGAAAATGATAACATTATGGATTTGGAGGAAGAGGAAGAACAAGAAAAAGACAAAGACAGTGAGGAAGGCTATGACTATGATGATGAGGATGATAGTGATTTTGTTGATGATGAGAATATAGATATGGATGAAGACTATGATGATTCTGAAGATGATGAGAATACGGATAAGAAAGAACAATTCAATGCAAACATGAAGCGTCAATCTTATTGTAGCGCCTGCAAAAGCAAAATTGATTTAGGGAATGTTGGGAGCTGTTCTTTCACCAAGGTTGATCCTCAACTTGAAGAAGACTACGAAACTGATGAAGAAATTTATGTTCAGCCGAATAATCCATACTTTGTTGCAAAACTTGTTAAGAGCAGACCTAATGAATTGCATATTCCAAAGAATATCATTAAAGACTTTTCCCTTAGCTTTCCAAAAAGGATTGCCGTTTTATGTTGCAAATGCAAGAATTTGAAACCGCATTCATCACAGAATATTCAAAGGAATGAAGTAGAAGCCTATCATCTCAACTTGCCGGCACCACAGACACCCATTCCCAAAAAATATAGGAGAGGACAAGTGTCTACATGGAAAGATGGTCGAGTATGTATCAACGGGTGGGCAGATTTTTGTGAAAAGTACAAGATTGAAGAAACTGATGTATGCATCTGTGAAATTGTGATGCGGCAACACAATATGGTAGAAATGTTACGAGTGCACGTTCGTCGCTCTATCAAGGAATGA 1083 0.3712 MTNAAEKIPDFFKVFLPERHSEGMFIPKVKLKLFEENVIKVVILRNRSGRIWHVKVRRPINGQLCFEDGWKRFREENSLKAADFLVFTYLGNNEFNVKILERSSKCEKIMDGNELGEENDNIMDLEEEEEQEKDKDSEEGYDYDDEDDSDFVDDENIDMDEDYDDSEDDENTDKKEQFNANMKRQSYCSACKSKIDLGNVGSCSFTKVDPQLEEDYETDEEIYVQPNNPYFVAKLVKSRPNELHIPKNIIKDFSLSFPKRIAVLCCKCKNLKPHSSQNIQRNEVEAYHLNLPAPQTPIPKKYRRGQVSTWKDGRVCINGWADFCEKYKIEETDVCICEIVMRQHNMVEMLRVHVRRSIKE. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03430 360 SUPERFAMILY DNA-binding pseudobarrel domain 306 351 IPR015300 -
Seca3g03430 360 Coils Coil 115 135 - -
Seca3g03430 360 ProSiteProfiles B3 DNA-binding domain profile. 42 103 IPR003340 GO:0003677
Seca3g03430 360 SMART B3_2 11 103 IPR003340 GO:0003677
Seca3g03430 360 MobiDBLite consensus disorder prediction 126 178 - -
Seca3g03430 360 Gene3D - 2 106 IPR015300 -
Seca3g03430 360 Gene3D - 211 358 IPR015300 -
Seca3g03430 360 PANTHER B3 DOMAIN-CONTAINING 6 342 - -
Seca3g03430 360 Pfam B3 DNA binding domain 11 102 IPR003340 GO:0003677
Seca3g03430 360 CDD B3_DNA 9 100 IPR003340 GO:0003677
Seca3g03430 360 SUPERFAMILY DNA-binding pseudobarrel domain 7 103 IPR015300 -
Seca3g03430 360 MobiDBLite consensus disorder prediction 126 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03430 Seca-Chr3 61588595 61592607 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03430 4 356 B3 DNA Binding Superfamily AT3G06160 24.438 4.69e-21 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca3g03430 B3 8.8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03430 - - mtr:120578114 252.677