Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03408 ATGACCATCATCCCTCCTTCTCAGCCGCCCCAGCTGCATCAACATCACCATCATCTTCGGGGCCCATCTCCATCTCCAATACCTCTCATCAACAAGTCTTCTTTACCTTCACCGTCAAAGTCGCCGGCGGTAGACTTCAGCCCGCCCCTTATAGCAATGGTCGTCGTCGTCGCCACGGCTTTCGTCGTCGTAACCTATTCCCGCCTCATCAGCCGCCACCTCAGGCCACCAATCCAGCGCCTACTCCGGCATTTCCGGCGGCGAAGGTTCCTGCCGCCCTCCTCTGTAGGCGACGTGGAGTCCCTCCAATACGATTCAACGTTGGATGGTCCACAAGTTTTCTCTCCCTACGGCCTCGACGAGTCAGTGATCAAAACCATTCCCTTCTCCCTTTACACCGCTAAATACGAAGAGTCTCTCCGTGACTGCGCCGTTTGCTTGCTGGAATTCGAAAACGACGATTACGTTCGCACGCTCCCCGTTTGCTCTCACACCTTCCACGTGGATTGTATCGACGCCTGGCTTCGTTCACACGCTAACTGCCCTCTTTGCCGCGCCGGAGTTCTCTGCGCTGAATCACCCTTCACACCTCTCATGGCTGCAAGGATCCGCCCCAGCTTCGATGACCATGCCATTCTCCATATAGACACTTCCCTCGATGCTCCCTCTCATTCGCCTCTCCCGGAGATAACTCCCTGCGTCGACGACCACTCCCCGAGAAGGACAAACGCAAATTCAGAGGATCGTTTTAACACCAGGGACTTTCTTCTGAAGCGTTCTTATTCGTTTGGCTTTGAGCGTAGCTTGCCGTCGGAGAGGATGGTTATCGACCCGGCCACGGCTTCGCCGTGGCGATACCGGAGAGGAAGCAGCAGTTTCTGGAGCAAGAGACCGTCGCCGTTTGGGTCCCTGGGGAAGTCGAGGGTGTTTTCGTTTAGATATTACAGAGGAATGAAATCGCCGTTTTTCCGGCGGAGGGGATTCTTCCCGTTGTCGGAGTCGAGCATGAGGTACGCCGCCGGTGGAAGCTCTTCGCGGCGGAGCAAGTCGATAGCGAGTCCTATGTTCCTGAGATCATCGGCGGCAGCGACGGCGGCGTTCTCGTCGAGCCGGCTGAGGTGCGGTGATCCTGAAGCGCTACTGTCGCCGGAGAGGTTTAATAGAAGATGA 1170 0.5641 MTIIPPSQPPQLHQHHHHLRGPSPSPIPLINKSSLPSPSKSPAVDFSPPLIAMVVVVATAFVVVTYSRLISRHLRPPIQRLLRHFRRRRFLPPSSVGDVESLQYDSTLDGPQVFSPYGLDESVIKTIPFSLYTAKYEESLRDCAVCLLEFENDDYVRTLPVCSHTFHVDCIDAWLRSHANCPLCRAGVLCAESPFTPLMAARIRPSFDDHAILHIDTSLDAPSHSPLPEITPCVDDHSPRRTNANSEDRFNTRDFLLKRSYSFGFERSLPSERMVIDPATASPWRYRRGSSSFWSKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSMRYAAGGSSSRRSKSIASPMFLRSSAAATAAFSSSRLRCGDPEALLSPERFNRR. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03408 389 CDD RING-H2_EL5-like 142 185 - -
Seca3g03408 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 189 IPR013083 -
Seca3g03408 389 FunFam RING-H2 finger protein ATL65 112 189 - -
Seca3g03408 389 SUPERFAMILY RING/U-box 126 190 - -
Seca3g03408 389 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Seca3g03408 389 Pfam Ring finger domain 142 185 IPR001841 -
Seca3g03408 389 SMART ring_2 143 184 IPR001841 -
Seca3g03408 389 PANTHER RING-H2 FINGER PROTEIN ATL16 33 203 IPR044600 GO:0016567|GO:0016740
Seca3g03408 389 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03408 Seca-Chr3 61286060 61287229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03408 37 389 C3H Transcription Factor Family AT3G18930 51.000 1.21e-97 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03408 - K19041 gmx:100806115 554.288