Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03393 ATGACTAACGCAGCTGAGAAGAACCTTGATTTCTTCAAAGTCTTCCTTCCAGAACGACACTCTGAAGGAATGTTTATCCCAAAAGTGAAGTTGAAACTCTTTGAAGAAAAGGTAATTAAGGTTGTCATCCTTAGAAATCGTAGTGGAAGAATTTGGCATGTCAAAGTTCGTCCCATTAATGGTCAATTCTGTTTTGAGAATGGTTGGAAGCGTTTCCGAGAAGAAAATTGTTTAAAGGCTGCTGACTTTTTAGTTTTTACATATTTGAGGAACAATGAGTTCAATGTTAAAATTCTTGAACTATCATCCAAATGTGAAAAGATAATGGATGAGAATGAACTTGGAGAACAAAAGGATGACATTATGGATTTGGAGGAAGAAGAAGAACAAGAAAATGACAATGACATTGAGGAAGGCTATGACTATGATGATGAGGATGATAGTGATTTTGTTGATGATGAGAATATAGATATGGATGAAGACTATGATGATTCTGAAGATGATGAGAATACGGATAAGAAAGAAGAATTCAATGCAAACATGAAGAGTCAATCTTATTGTAGTGCCTGCAAAGGCAAAAATTTAGTTGATTTAGGGAATGTCGGGAGCTGTTCTTTCACCAAGGTTGATCCTCAACTTGAAGAAGACTACGAAACTGATGAAGAAATTTATGTTCAGCCGAATAATCCATACTTTGTTGCAAAACTTGTTAAGAGCAGACCTAATGAATTGCATATTCCAAAGAATATCATTAAAGACTTTTCCCTTAGCTTTCCAAAAAGGATTGCCGTTTTATGTTGCAAATGCAAGAATATTCAAAGGAATGAAGTAGAAGCCTATCATCTCAACTTGCCGGCACCACAGACACCCATTCCCAAAAAATATAGGAGAGGACAAGTGTCTACATGGAAAGATGGTCGAGTATGTATCAACGGGTGGGCAGATTTTTGTGAAAAGTACAAGATTGAAGAAACTGATGTATGCATCTGTGAAATTGTGATGCGGCAACACAATATGGTAGAAATGTTACGAGTGCACGTTCGTCGCTCTATCAAGGAATGA 1062 0.3663 MTNAAEKNLDFFKVFLPERHSEGMFIPKVKLKLFEEKVIKVVILRNRSGRIWHVKVRPINGQFCFENGWKRFREENCLKAADFLVFTYLRNNEFNVKILELSSKCEKIMDENELGEQKDDIMDLEEEEEQENDNDIEEGYDYDDEDDSDFVDDENIDMDEDYDDSEDDENTDKKEEFNANMKSQSYCSACKGKNLVDLGNVGSCSFTKVDPQLEEDYETDEEIYVQPNNPYFVAKLVKSRPNELHIPKNIIKDFSLSFPKRIAVLCCKCKNIQRNEVEAYHLNLPAPQTPIPKKYRRGQVSTWKDGRVCINGWADFCEKYKIEETDVCICEIVMRQHNMVEMLRVHVRRSIKE. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03393 353 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Seca3g03393 353 PANTHER B3 DOMAIN-CONTAINING 7 335 - -
Seca3g03393 353 Gene3D - 212 351 IPR015300 -
Seca3g03393 353 SMART B3_2 11 102 IPR003340 GO:0003677
Seca3g03393 353 CDD B3_DNA 11 99 IPR003340 GO:0003677
Seca3g03393 353 SUPERFAMILY DNA-binding pseudobarrel domain 7 100 IPR015300 -
Seca3g03393 353 Pfam B3 DNA binding domain 11 99 IPR003340 GO:0003677
Seca3g03393 353 Gene3D - 2 105 IPR015300 -
Seca3g03393 353 MobiDBLite consensus disorder prediction 125 171 - -
Seca3g03393 353 Coils Coil 107 134 - -
Seca3g03393 353 MobiDBLite consensus disorder prediction 125 172 - -
Seca3g03393 353 SUPERFAMILY DNA-binding pseudobarrel domain 225 344 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03393 Seca-Chr3 61193654 61196598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03393 11 349 B3 DNA Binding Superfamily AT3G06160 25.731 6.40e-21 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca3g03393 B3 6.5e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03393 - - mtr:120578114 269.626