Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03387 ATGGACGATTACCCGAGCAGCGACGACGATTACCGTTACTCTGATCAGGAGGACTCCGTCGACGACGCTTTCGAAAACGACGACCACGATTATCAGTTGCTCTCTTCCAAGGGTCCCACTACTCAGGTGATAACGAAGGAATCACTGCTAGCTGCACAGAGGGAGGATTTGCGCAGAGTGATGGACATGCTATCTGTAAAAGAGCAACATGCACGAACACTGCTTATTTATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTGTATGTAGATAGGGGGAAAGCATTTCTGTTTGCTGAAGCTGGTGTTAGTGCGGATGAACATCATGACTCTGACTCATCTGTTCGCGGTTCAGTAATGTGTGAAATATGCATAGAGGACGTTCCTACTAATGAATCGACAAGAATGGACTGTGGTCACGGCTTCTGTAACTCCTGTTGGATAGAGCATTTTATAGTCAAGATAAATGAGGGCCAAAGTAAACGCATTAGATGCATGGCATACAAATGTTATTCCATTTGTGATGAAGCTGTAGTAAGATCTCTACTCAGTATAAAGCACTCTGACATGAAAGAGAAATATGAACGCTTTCTTCTTGAATCCTACATTGAAGACAATAAGAGAGTTAAATGGTGTCCCAGCACACCTCATTGTGGGAATGCAATACGTGTTGAGGAAGATGACTTATGTGAGGTAGAATGTTCATGTGGTTTACAATTTTGCTTTAATTGCTTGTCAGAAGCGCACTCCCCTTGTTCATGTTTGATGTGGGAGCTCTGGGCTAAGAAGTGTCGAGATGAATCAGAGACTGTTAATTGGATAACTGTTCATACAAAACCTTGTCCGAAGTGCCATAAACCAGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGACAAGCATTTTGTTGGTTGTGTGGTGGAGCCACTGGCCGAGAGCACACTTGGTCAAGTATAGCTGGTCATAGTTGTGGTCGCTACAAAGACCAAGAAAAAACAGCTGAACGGGCAAAGAGGGATCTATATAGGTATATGCACTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGCTTGAAAGTAAACTGAAGGAGACCATACAAGGGAAGATTGCTATTTCAGAAGAAAAGGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGTGTCCTTTCATATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAAGAAGAAATGACAGAAGCTCAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGCTTGAGGCAAATGTTGAAAATCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTAATGATGATAAGGTCATGGAGATAAGGATGAGGATAATCAATCTGTCATCAATTATTGACAAACTTTGTCAAAAAATGTATGAGTGCATTGAGAATGATTTATTGGGTTCTCTCCATATTGGCATGCACAGTATAGCACCATATAAATCAAAGGGCATAGAGAGGGCTTCAGAACTTTCAGTTTGTTGGAGTAATAAAGCCAATAAAACTGGTAAATGTCTATTGTGGGACTTTGTTTAA 1626 0.4077 MDDYPSSDDDYRYSDQEDSVDDAFENDDHDYQLLSSKGPTTQVITKESLLAAQREDLRRVMDMLSVKEQHARTLLIYHRWDVEKLFAVYVDRGKAFLFAEAGVSADEHHDSDSSVRGSVMCEICIEDVPTNESTRMDCGHGFCNSCWIEHFIVKINEGQSKRIRCMAYKCYSICDEAVVRSLLSIKHSDMKEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEEDDLCEVECSCGLQFCFNCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKDQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTEAQREIKQNLFEDQQQQLEANVENLSKILEEPFETFNDDKVMEIRMRIINLSSIIDKLCQKMYECIENDLLGSLHIGMHSIAPYKSKGIERASELSVCWSNKANKTGKCLLWDFV. 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03387 541 Pfam IBR domain, a half RING-finger domain 192 254 IPR002867 GO:0008270
Seca3g03387 541 FunFam RBR-type E3 ubiquitin transferase 250 497 - -
Seca3g03387 541 ProSiteProfiles Zinc finger RING-type profile. 121 169 IPR001841 -
Seca3g03387 541 ProSiteProfiles TRIAD supradomain profile. 117 331 IPR044066 -
Seca3g03387 541 Pfam Ariadne domain 331 535 IPR045840 -
Seca3g03387 541 Coils Coil 434 454 - -
Seca3g03387 541 FunFam RBR-type E3 ubiquitin transferase 115 206 - -
Seca3g03387 541 CDD Rcat_RBR_ARI1-like 275 328 - -
Seca3g03387 541 SUPERFAMILY RING/U-box 262 319 - -
Seca3g03387 541 CDD BRcat_RBR_ANKIB1 199 263 - -
Seca3g03387 541 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 48 397 IPR031127 GO:0004842|GO:0016567
Seca3g03387 541 SUPERFAMILY RING/U-box 192 260 - -
Seca3g03387 541 Gene3D - 250 497 - -
Seca3g03387 541 MobiDBLite consensus disorder prediction 1 25 - -
Seca3g03387 541 SUPERFAMILY RING/U-box 118 204 - -
Seca3g03387 541 CDD RING-HC_RBR_TRIAD1 119 170 - -
Seca3g03387 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 206 IPR013083 -
Seca3g03387 541 SMART ibrneu5 262 327 IPR002867 GO:0008270
Seca3g03387 541 SMART ibrneu5 192 254 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03387 Seca-Chr3 61159065 61164842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03387 61 521 ARIADNE family AT2G16090 72.688 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03387 K11968 - gmx:100783343 970.689