Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03342 ATGTCTGTTACAGACCTTAAGGAGCGTCACTCTGCTTCCACCGACACCGTCAACAATCTCAGGGAGCGGTTGAAGCAGAAGCGCCTTTCTTTGCTTGATACAGATATTTCTGGGTATTCCAGGTCTCAGGGTAGAACTCCTGTGAGCTTTGGACCCACGGATCTGGTTTGCTGTAGAACTTTGCAGGGTCATACTGGAAAGGTGTATTCATTGGATTGGACTTCTGAAAGGAATCAGATTGTTAGTGCATCCCAAGATGGCCGATTAATAGTGTGGAATGCTCTAACAAGGCAGAAAATTCATGCCATAAAGCTGCCTTGTGCATGGGTCATGACCTGTGCTTTCTCACCAACTGGACAGTCTGTTGCATGTGGGGGTCTTGACAGTGTTTGCTCTATCTTCAATCTTAATTCTCCCACTGACAAGGATGGGAATCTACCTGTTTCACGGATGCTTAATGGACACAAGGGTTATGTTTCCTCTTGTCAGTACGTTCCAGATGAAGACACTCACTTAATTACTGCTTCTGGTGATCAGACATGTGTTTTATGGGATATCACCACTGGCCTTAAAACATCTGTCTTTGGAGGTGAATTTCAGTCTGGACATACTGCAGATGTACTTAGCATCTCCATTAATGGATCCAACTCAAGAATGTTTGTATCTGGTTCTTGTGATTCAACTGCTCGATTGTGGGATACTCGTGTGGCAAGTCGTGCAGTGAGGACTTTTCATGGGCATGAAGGAGATATTAATGCAGTCAAATTCTTTCCAGATGGAAATAGATTTGGAACTGGCTCAGATGATGGAACATGCAGATTGTTTGACATTAGGACTGGACACCAACTCCAAGTATATTATCAGCAGCACAGTGACAATGACATCCCACCTGTGACCTCCATTGCATTCTCCGTATCGGGGAGACTTCTTTTTGCTGGATATTCAAATGGAGATTGCTATGTTTGGGACACTTTATTGGCAAAGGTGGTCTTGAATTTAGGATCTCTCCAAGACTCTCATGATGGAAGGATCAGTTGTTTAGGTTTGTCAGCTGATGGAAGTGCTTTGTGTACAGGAAGTTGGGACACAAACTTAAAGATATGGGCATTTGGAGGGCATAGGAGAACTAGAGTCAGTGGCCAGTGA 1146 0.4415 MSVTDLKERHSASTDTVNNLRERLKQKRLSLLDTDISGYSRSQGRTPVSFGPTDLVCCRTLQGHTGKVYSLDWTSERNQIVSASQDGRLIVWNALTRQKIHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLNGHKGYVSSCQYVPDEDTHLITASGDQTCVLWDITTGLKTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDINAVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHSDNDIPPVTSIAFSVSGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQDSHDGRISCLGLSADGSALCTGSWDTNLKIWAFGGHRRTRVSGQ. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03342 381 FunFam Guanine nucleotide-binding protein subunit beta 2 369 - -
Seca3g03342 381 SUPERFAMILY WD40 repeat-like 54 368 IPR036322 GO:0005515
Seca3g03342 381 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
Seca3g03342 381 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 368 IPR001680 GO:0005515
Seca3g03342 381 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 337 368 - -
Seca3g03342 381 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 93 - -
Seca3g03342 381 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 194 IPR001680 GO:0005515
Seca3g03342 381 Gene3D - 9 369 IPR015943 GO:0005515
Seca3g03342 381 SMART WD40_4 54 93 IPR001680 GO:0005515
Seca3g03342 381 SMART WD40_4 279 323 IPR001680 GO:0005515
Seca3g03342 381 SMART WD40_4 145 185 IPR001680 GO:0005515
Seca3g03342 381 SMART WD40_4 237 276 IPR001680 GO:0005515
Seca3g03342 381 SMART WD40_4 96 135 IPR001680 GO:0005515
Seca3g03342 381 SMART WD40_4 329 369 IPR001680 GO:0005515
Seca3g03342 381 SMART WD40_4 192 233 IPR001680 GO:0005515
Seca3g03342 381 CDD WD40 57 369 - -
Seca3g03342 381 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 235 - -
Seca3g03342 381 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 4 369 IPR016346 GO:0007165
Seca3g03342 381 Pfam WD domain, G-beta repeat 287 323 IPR001680 GO:0005515
Seca3g03342 381 Pfam WD domain, G-beta repeat 150 185 IPR001680 GO:0005515
Seca3g03342 381 Pfam WD domain, G-beta repeat 201 233 IPR001680 GO:0005515
Seca3g03342 381 Pfam WD domain, G-beta repeat 339 368 IPR001680 GO:0005515
Seca3g03342 381 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515
Seca3g03342 381 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Seca3g03342 381 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 242 IPR001680 GO:0005515
Seca3g03342 381 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Seca3g03342 381 PRINTS G protein beta WD-40 repeat signature 172 186 IPR020472 -
Seca3g03342 381 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Seca3g03342 381 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 189 - -
Seca3g03342 381 PIRSF GNBP_B 1 371 - -
Seca3g03342 381 PRINTS Beta G protein (transducin) signature 99 114 IPR001632 -
Seca3g03342 381 PRINTS Beta G protein (transducin) signature 80 94 IPR001632 -
Seca3g03342 381 PRINTS Beta G protein (transducin) signature 117 134 IPR001632 -
Seca3g03342 381 PRINTS Beta G protein (transducin) signature 61 77 IPR001632 -
Seca3g03342 381 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 280 - -
Seca3g03342 381 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515
Seca3g03342 381 ProSitePatterns Trp-Asp (WD) repeats signature. 172 186 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03342 Seca-Chr3 60421769 60425424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03342 92 381 U-box Gene Family AT1G04510 23.684 3.14e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03342 K04536 - gmx:100794776 754.592