Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03339 ATGACGGACTCTACAACCCCACTCGTGAGCTTGAAGGTCCTTGTCTTAGCAGGAATTTTCCTCGTCATCTTGCTGTTAATAGGGCTCTTGATCTTCCTCTGCTTCCGTGGGAACCGAAGCTGCAGGAACCGCAAATTGGTAGTGAAGCACAGTTCCGGCACTATCCCTTTGGTTTCCAAGGAGATCGCGGTGGTTAAGTCCTTGGATCTCACCCCTGCCTCTGACTCTGGCCAGGCGCGGATTGAAATTGAAGAGGACTCTGATGTTGATCCGAAGAAAGAGGCGGAGATCAAGGTTGAAATTGAAAAGATAAGGAAGAGTGACGTGTCCACGACGGTGGAGGATCCTAACATAGGGTGGGGACGCTGGTATACCATGAGGGAAGTGGAGATTGCGACACGTGGATTTGCGGAAGGGAATGTGATTGGGGAAGGAGGGTATGGGGTTGTGTACAGAGGAGTTCTGCAAGATGGTTCTGTTGTGGCTGTGAAGAACCTTCTCAACAACAAGGGTCAAGCTGAGAAGGAGTTTAAGGTGGAGGTTGAAGCCATTGGAAAAGTAAGGCATAAGAACTTGGTTGGTTTAGTAGGATATTGTGCTGAAGGTCCTCGAAGGATGCTTGTTTATGAATATCTTAACAACGGGAATTTGGAGCAGTGGCTGCATGGTGATGTAGGACCAGTGAGCCCCTTGACATGGGATATTCGAATGAAGATTGCCATTGGGACTGCAAAAGGGCTAGCCTATTTGCACGAAGGCTTAGAACCCAAAGTTGTGCACCGAGATATAAAATCCAGTAACATTCTTTTGGATAAAAACTGGAATGCCAAAGTATCAGATTTTGGACTTGCCAAGCTCTTAGGATCTGAGAAAAGCCATGTGACTACACGTGTAATGGGAACATTTGGATATGTTTCACCTGAGTATGCAAGCACAGGTATGCTAAATGAGCGCAGTGATGTGTACAGCTTTGGAGTTCTGCTCATGGAGATAATTACAGGAAGATGCCCCATTGATTATTCAAGACCACCTGGAGAGGTGATTTTGGTTTTTGTCCATGTTTTCATTAGTGTATTCCATGAACACCTTGGAGTCTTACCTGAGTTACCTCTATTTGTTTGA 1122 0.4608 MTDSTTPLVSLKVLVLAGIFLVILLLIGLLIFLCFRGNRSCRNRKLVVKHSSGTIPLVSKEIAVVKSLDLTPASDSGQARIEIEEDSDVDPKKEAEIKVEIEKIRKSDVSTTVEDPNIGWGRWYTMREVEIATRGFAEGNVIGEGGYGVVYRGVLQDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGPRRMLVYEYLNNGNLEQWLHGDVGPVSPLTWDIRMKIAIGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKNWNAKVSDFGLAKLLGSEKSHVTTRVMGTFGYVSPEYASTGMLNERSDVYSFGVLLMEIITGRCPIDYSRPPGEVILVFVHVFISVFHEHLGVLPELPLFV. 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03339 373 ProSiteProfiles Protein kinase domain profile. 136 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03339 373 SMART serkin_6 136 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03339 373 FunFam Probable serine/threonine-protein kinase At1g01540 116 211 - -
Seca3g03339 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Seca3g03339 373 Gene3D Phosphorylase Kinase; domain 1 92 211 - -
Seca3g03339 373 PANTHER OS01G0323000 PROTEIN 4 350 - -
Seca3g03339 373 CDD STKc_IRAK 142 347 - -
Seca3g03339 373 FunFam Putative receptor-like serine/threonine-protein kinase 212 365 - -
Seca3g03339 373 Gene3D Transferase(Phosphotransferase) domain 1 212 363 - -
Seca3g03339 373 Pfam Protein kinase domain 138 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g03339 373 SUPERFAMILY Protein kinase-like (PK-like) 114 353 IPR011009 -
Seca3g03339 373 ProSitePatterns Protein kinases ATP-binding region signature. 142 164 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03339 Seca-Chr3 60387400 60391443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03339 124 350 Trihelix Transcription Factor Family AT1G70460 57.269 4.58e-84 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Seca3g03339 Pkinase 9.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03339 - - tpra:123913149 524.242