Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03332 ATGCTTCTTTCATGTCAAAAATACAACCTTTACCTTCCTTGCTCCTCTGTCCATTACACCAACAACCCAACATCCACCATTGTCAAATGCCAAAACTCGAACGAGCAGCACCCCATTCTTCGCAAACACAACGCCAAATCCACCGCTTTTCTCCTTCATCACCTTTCCCACAAGGACAGTGACAGTGATGATGATCACCGTTCACCCAGTGACCTACAAGACCCCACACCCCACGAAGAAAAGGTGAAGCTTTTGGAGCTTTCCCTCGTGAGGAAAAGGACCCCTCAGTTCCCTGGCTCCATTTATGCTCAGTCCCCCAGCGACCCTGATGTGGGTTCTTCTCTTCCTCCTCTGAGCACTATGTTTCGATCAAGCGAGGATGAAGAGGAGGAGATGATCATGCGCGCTCTTGAGATTCGCAGGAAGGTGACTGAAGAGGTTTTCAAAGAAGCCATGCGAAAGGGAAAGTTTGGAATCACTTACACCACCAATTTGGTTAGTAGGATAACTGGTTTTATTGATTACATCATGATTGAAGCTGCTAACTTGAAAAGATTGCCGGAATATTCTCACTCCACCTTCAATTTACGCGCCAAAACCGTCATTGAAGACTCTCAAGTTGTGTCACTTGTAAGATGGTTGAAGCATAATTCACTATCGTATCCTCAGATAGCAAAGCTCATTTTGATGACAAGAGGAAAACTTGACTTGATAAGGAATCGCGTTGACTGGTTGAAGTCAGTACATGTGAAAGGAGAGTTTATTGGGAATGCAATGTTGAAGTCTGGAGATAATATTTTGCTACGCAGCAATAAAGAGCTGGATGAGATTGTTGAGTATTTAGAGTCCAGTGGTGTTAGGAGGGATTGGATGGGTTATGTCATTAGTAGATGTCCTGAATTGTTGTCTTACAGCTCAGAAGAAGTGAAAACTCGTGTGCAGTTCTTCCTAGATATGGGTTTAGATGAGAAGGATTTTGGCACAATGGTTTTTGATTTTCCTAGAGTACTTGGTTACTATACTCTGGAAGAAATGAACCAAAAGATTAATTACTTAAAAGAATTTGGGCTTCAAAGTAAGGATGTTGGCAAATTGCTGGCATTTAGGCCACAGTTGATGGCGTGCAGCATTGATGAACAATGGAAACCTCTTGTTAAGTATCTGTACTATTATGGGATCGACCGAGATGGTATGAGGAGAATGCTTACCCTTAAACCAATGGTCTTTTGTGCTGACTTGCAGATGACTATTGTGCCAAAGGTAAAGTTTTTTCAGGACATAGGGGTTCGAAACGATGCAATTGGCAACATGCTTGTAAAGTTTCCTACTCTACTCACTTACAGCCTGGACAAGAAGATTAAGCCAGTGGTCGTATTCTTGATGACCAAGGCTGGAGTCAGTGAGAGAGATATTGGTAAGGTTGTAGCTCTTGGACCTGAGCTCTTGGGATGCAGCATAGTACATAAACTTGAAGTAAATGTAAAATACTTTTTGTCTCTTGGCATACGTCTTCGGCAATTGGGTGAAATGATTGCTGATTTCCCAATGCTGCTCAGATACAATATAGATGTCCTTCGTCCTAAGTATAGTTATTTGCGGAAAACGATGGTCCGGACCTTGCAAGATCTCATTGAGTTTCCAAGGTTTTTCAGCTATTCTCTAGATGGTCGAATTATCCCAAGACACAAAGTTCTGGTGGAGAATCAGATTAATGTTAAGCTGAGATACATGTTGGGTAGCACTGATGAAGAATTTAACAAAATGGTGAAGGCTCTAATTAGAAAACGCCAGAGATTTCAATCTGCTGTCATGAAGGAGGATCCTAGTACTGATCGATTGAATCGATTGATTTGTGTTCAAGGATACATGAGAGATTTCAGATTACTGGATTCTCAGAATATTGCTCCAACTATACAGAAAAGACTTTGTGAATATATGACTTACATGTCTATTAATATTGTTTCTAATGCTAGCTGCACAACCAACTGTCTTGCTCCACTTGCAAAGATTACTAAACGCGGTGATTCGGTGGATGAGAAGATTAAGAAGCTTGATGCTGAACTTAGTAGATATAAAGAACAGATCAAGAAAACAAGACCTGGTCCCACCTCACTGGTTGTTTGCTTAGTTCATTTGTCATAA 2142 0.4136 MLLSCQKYNLYLPCSSVHYTNNPTSTIVKCQNSNEQHPILRKHNAKSTAFLLHHLSHKDSDSDDDHRSPSDLQDPTPHEEKVKLLELSLVRKRTPQFPGSIYAQSPSDPDVGSSLPPLSTMFRSSEDEEEEMIMRALEIRRKVTEEVFKEAMRKGKFGITYTTNLVSRITGFIDYIMIEAANLKRLPEYSHSTFNLRAKTVIEDSQVVSLVRWLKHNSLSYPQIAKLILMTRGKLDLIRNRVDWLKSVHVKGEFIGNAMLKSGDNILLRSNKELDEIVEYLESSGVRRDWMGYVISRCPELLSYSSEEVKTRVQFFLDMGLDEKDFGTMVFDFPRVLGYYTLEEMNQKINYLKEFGLQSKDVGKLLAFRPQLMACSIDEQWKPLVKYLYYYGIDRDGMRRMLTLKPMVFCADLQMTIVPKVKFFQDIGVRNDAIGNMLVKFPTLLTYSLDKKIKPVVVFLMTKAGVSERDIGKVVALGPELLGCSIVHKLEVNVKYFLSLGIRLRQLGEMIADFPMLLRYNIDVLRPKYSYLRKTMVRTLQDLIEFPRFFSYSLDGRIIPRHKVLVENQINVKLRYMLGSTDEEFNKMVKALIRKRQRFQSAVMKEDPSTDRLNRLICVQGYMRDFRLLDSQNIAPTIQKRLCEYMTYMSINIVSNASCTTNCLAPLAKITKRGDSVDEKIKKLDAELSRYKEQIKKTRPGPTSLVVCLVHLS. 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03332 713 Coils Coil 674 694 - -
Seca3g03332 713 Gene3D Transcription termination factor 3, mitochondrial 352 599 IPR038538 -
Seca3g03332 713 SMART mt_12 472 503 IPR003690 GO:0003690|GO:0006355
Seca3g03332 713 SMART mt_12 363 394 IPR003690 GO:0003690|GO:0006355
Seca3g03332 713 SMART mt_12 540 571 IPR003690 GO:0003690|GO:0006355
Seca3g03332 713 SMART mt_12 257 287 IPR003690 GO:0003690|GO:0006355
Seca3g03332 713 SMART mt_12 327 358 IPR003690 GO:0003690|GO:0006355
Seca3g03332 713 SMART mt_12 508 538 IPR003690 GO:0003690|GO:0006355
Seca3g03332 713 SMART mt_12 292 322 IPR003690 GO:0003690|GO:0006355
Seca3g03332 713 SMART mt_12 399 430 IPR003690 GO:0003690|GO:0006355
Seca3g03332 713 SMART mt_12 435 467 IPR003690 GO:0003690|GO:0006355
Seca3g03332 713 Pfam mTERF 334 585 IPR003690 GO:0003690|GO:0006355
Seca3g03332 713 Pfam mTERF 221 354 IPR003690 GO:0003690|GO:0006355
Seca3g03332 713 PANTHER CGI-12 PROTEIN-RELATED 262 360 IPR003690 GO:0003690|GO:0006355
Seca3g03332 713 MobiDBLite consensus disorder prediction 57 79 - -
Seca3g03332 713 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 657 664 IPR020830 GO:0016620
Seca3g03332 713 Gene3D - 643 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03332 Seca-Chr3 60300049 60305772 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca3g03332 mTERF 1.3e-53 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03332 K15032 - mnt:21401514 843.188