Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03331 ATGGCTTCTGCAGATGTTGAGTTCCGATGCTTCGTCGGTGGGCTTGCCTGGGCCACCGACAGCGATGCTCTTGAGAAAGCCTTTTCTCCTTATGGCGAGATCGTTGAATCGAAGGTCATCAATGACCGTGAGACTGGAAGGTCAAGGGGGTTCGGATTCGTGACCTTCTCATCGGAGCAGTCGATGAGAGATGCAATCGATGCGATGAACGGCCAGAATCTTGACGGCCGTAACATCTCTGTTAACGAGGCCCAGTCCCGTGGTAGGGGCGGCGGTGGCGGCGGTGGCGGCGGTTTCGGAGGTCGTCGTGAAGGTGGCTACAACCGAAATGGTGGCGGCGGTGGCGGCTATGGAGGTGGTTATGGTGGTGGCAGAGACCGTGGCTACGGTGATGGTGGATCCCGCTATTCTCGCGGTGGAGGCGGCGGTGGAAACTGGAGGGACTAG 447 0.5884 MASADVEFRCFVGGLAWATDSDALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFSSEQSMRDAIDAMNGQNLDGRNISVNEAQSRGRGGGGGGGGGFGGRREGGYNRNGGGGGGYGGGYGGGRDRGYGDGGSRYSRGGGGGGNWRD. 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03331 148 PANTHER GEO13361P1-RELATED 3 142 - -
Seca3g03331 148 MobiDBLite consensus disorder prediction 71 85 - -
Seca3g03331 148 FunFam Glycine-rich RNA-binding protein GRP1A 2 112 - -
Seca3g03331 148 MobiDBLite consensus disorder prediction 71 148 - -
Seca3g03331 148 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Seca3g03331 148 CDD RRM2_NsCP33_like 9 84 - -
Seca3g03331 148 SUPERFAMILY RNA-binding domain, RBD 8 122 IPR035979 GO:0003676
Seca3g03331 148 Gene3D - 2 107 IPR012677 -
Seca3g03331 148 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Seca3g03331 148 SMART rrm1_1 9 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03331 Seca-Chr3 60260240 60261587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03331 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 35.443 5.80e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03331 - K13195 ccaj:109800369 160.229