Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03327 ATGGCCTCAAGCTCTCTCAGCAAACAAAAGCCTTGTGACTCCTCTTGGACACCAAAACAGAACAAGCTGTTTGAAAAGGCACTTGCAAAATATGATAAGGACACCCCAGAAAGATGGCAGAATGTAGCCAAAGCAGTTGGTGGAAAATCTGCAGAAGAAGTTAAGAGACACTATGAAATCCTCTTGGAGGATCTCAGACACATAGAGTCTGGCCGTATTCCAATTCCCAACTACAAGTCCACAGGAAGCACCACCAATGTTGATGAAGAAGAGAGGGCTTCTGAAGTATCTTAA 294 0.4388 MASSSLSKQKPCDSSWTPKQNKLFEKALAKYDKDTPERWQNVAKAVGGKSAEEVKRHYEILLEDLRHIESGRIPIPNYKSTGSTTNVDEEERASEVS. 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03327 97 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Seca3g03327 97 CDD SANT 15 62 IPR001005 -
Seca3g03327 97 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Seca3g03327 97 SMART sant 12 64 IPR001005 -
Seca3g03327 97 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Seca3g03327 97 MobiDBLite consensus disorder prediction 73 97 - -
Seca3g03327 97 Gene3D - 9 75 - -
Seca3g03327 97 FunFam Transcription factor SRM1 8 75 - -
Seca3g03327 97 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Seca3g03327 97 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 89 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03327 Seca-Chr3 60173287 60175500 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g03327 Myb_DNA-binding 9.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03327 - - gmx:100798314 177.178