Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03326 ATGTTACACTGTCTCAACACTTCTTCGGACATGACAGTGTTGGAAAGGCAAAGGGCAAGGAAGAAGTGGCAACAACAAGAACAGGAGGAACACGATCGCCAAAGCTACTTTTGTGGAAGCACTGGGTTTTCATCTTCTTCTTCGCTGCAAGTTCATGGGGGTTTGGTGGGTAGTGATTCTGGGCTTGGTGAGGTTGTAGTTGCAGCTCAATCGATGAAACCTGACCCGGGTTTGGAAAATGGGTGGCCCGAATTAGGCAAATTTGAAACGGGTTTCGGGTCTTCTTCTGGATTGGTTGTTCCTCCTGCTTCTGGGTTTGACGTGAATTCTTCAATTTCAAGGACTGGTGGAAGAGATTCAGCCATAGAGAAGGTGATGAATTCCGCATGTGGGAAGAAGAGGAAAGCTGCTGATAAGGCTCAGAATTCCAAGGTTGTTACAGAGAGTGATAGCAAAGAGAAGAGGATCAAAGTAAGTGGTGGTGAAGAAGGGGAATCCAAAATCACGGAGCAAAAAAGCAACAAGGAAACTAGTTCTGCAGATAATTCAAAAGGGTCTGAGGTTCAAAATCAAAAGCCTGAATACATTCATGTCCGTGCACGTCGTGGTCAAGCCACTGACAGTCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATTAGCGAGAGAATGAAGTATTTGCAAGATTTAGTACCGGGTTGCAACAAAATTGCAGGAAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAAAGACAAGTTGAGTTCTTGTCAATGAAATTAGCTGCTGTAAACCCAAGACTTGACTTCAACATTGATGAATTGTTTGCCAAAGAGGTAAAGCCAATGCAAGTGTTTCCTCAAAGTTTTCCAACCATAGGAATGCCATCAGAAATGACTAACCCTGCTTATCTTCAGTTCAATTCAGCACAACAACTTGTTTCTTGTTGTGGTGGATTGATAAATAATATGGGGATAATCCCTCCAGATATGGCACTTCGAAGGAACATTAGTGCCCCTCTATCTTTGCCTGAAACGTTTCTTGACTCATCTTGTTTCAATCAGCAAATTCTACCCTCCTCAACATGGGAAGGTGATTTCCAAAACCTTTACAATATGGCTTTTGATCAAGGAAGAACAGCATCCTTTCCTTCTCAACCATTTACAGGTCTAGTTGAAGCTAGCAATTTGAAGATGGAGATGTAA 1218 0.422 MLHCLNTSSDMTVLERQRARKKWQQQEQEEHDRQSYFCGSTGFSSSSSLQVHGGLVGSDSGLGEVVVAAQSMKPDPGLENGWPELGKFETGFGSSSGLVVPPASGFDVNSSISRTGGRDSAIEKVMNSACGKKRKAADKAQNSKVVTESDSKEKRIKVSGGEEGESKITEQKSNKETSSADNSKGSEVQNQKPEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFAKEVKPMQVFPQSFPTIGMPSEMTNPAYLQFNSAQQLVSCCGGLINNMGIIPPDMALRRNISAPLSLPETFLDSSCFNQQILPSSTWEGDFQNLYNMAFDQGRTASFPSQPFTGLVEASNLKMEM. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03326 405 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 273 IPR036638 GO:0046983
Seca3g03326 405 SMART finulus 210 260 IPR011598 GO:0046983
Seca3g03326 405 CDD bHLH_AtBPE_like 194 279 - -
Seca3g03326 405 MobiDBLite consensus disorder prediction 129 216 - -
Seca3g03326 405 Gene3D - 201 275 IPR036638 GO:0046983
Seca3g03326 405 MobiDBLite consensus disorder prediction 129 174 - -
Seca3g03326 405 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 93 312 IPR024097 GO:0006355
Seca3g03326 405 MobiDBLite consensus disorder prediction 194 216 - -
Seca3g03326 405 FunFam Basic helix-loop-helix transcription factor 201 273 - -
Seca3g03326 405 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 254 IPR011598 GO:0046983
Seca3g03326 405 MobiDBLite consensus disorder prediction 175 190 - -
Seca3g03326 405 Pfam Helix-loop-helix DNA-binding domain 208 255 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03326 Seca-Chr3 60144430 60147853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03326 10 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 38.677 3.92e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g03326 HLH 3.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03326 - - gmx:100794256 482.256