Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03313 ATGGTCATACTTTTCATCTATGGCATTGATTGGACCTTTCTTCCCAGGTTTGCTGAAACAGGAGAAGCATTGGTATCTTCTGTAGATAAAGTCATATTTGTTGGATCGCCTGGTGTTGGTAAAATGATAATGAGAAATGCTGCTGAGACCCTTATACCAGTTACACTAGAGCTTGGGGGGAAAGATGCATTTATTGTTTGCGAAGACGTAGATGTGGACCATTCTAGTGGACAGAACTGTGCTGGGGCTGAGCGATTTTATGTCCACAGGGAAATTTATTCTTCTTTTGTCAGTAAAGTTACCAAAATCATAAAGTCTGTTACAGCTGGCCCACCACTTGTTGGCAAGTTTTCTCTTACATATTTCTTCCAATTCTCAACTCGTTCTACTAATCATCAGGGATTCCTTCATAAACTCATTTGGAAATCCATAGCTCCTTGTAAAGTCAAGTTCTTTGCCTAG 462 0.4004 MVILFIYGIDWTFLPRFAETGEALVSSVDKVIFVGSPGVGKMIMRNAAETLIPVTLELGGKDAFIVCEDVDVDHSSGQNCAGAERFYVHREIYSSFVSKVTKIIKSVTAGPPLVGKFSLTYFFQFSTRSTNHQGFLHKLIWKSIAPCKVKFFA. 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03313 153 SUPERFAMILY ALDH-like 18 114 IPR016161 GO:0016491
Seca3g03313 153 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 13 59 IPR016162 GO:0016491
Seca3g03313 153 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 56 63 IPR029510 GO:0016491
Seca3g03313 153 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 60 114 IPR016163 GO:0016620
Seca3g03313 153 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 14 116 - -
Seca3g03313 153 Pfam Aldehyde dehydrogenase family 18 113 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03313 Seca-Chr3 59987565 59989346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03313 17 119 Aldehyde Dehydrogenase Gene Family AT3G66658 71.930 1.58e-51 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03313 - - lja:Lj4g3v2267580.1 188.734