Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g03302 ATGATATCAAGTCATTGTGTAGCTTGTAAGAATCAAAGAATAAAGTGCTTTTCAGATTGCATCTTCTCTCCTTACTTCCCTCATAATGATCCTCAAAGATATGCCATTGTTCACAGAATCTATGGTGGCAGCGACATCGGAAGAATGCTTCAGCAAATTCCACCATATGTCCGAGCACAGGTTGCAGATTGTTTACATTATGAAGCACAATGTCGTGTTCAAGACCCTATTTATGGTTGTTTTGGAATTACCTCTCAGGTGGTTCAACAGATCCATAATACAGAAACTGAGTTAGCCAAAACCGAAGTTCTGATTAACATTCTCAAGTTCCAATCCCAACAAGCTGAAAATGAATCAAATTTCCACATCTTACGTAACACAGGGCAGTTTCAGTTTGGAAGCACTTCAAGCCAAGATTCTTGGTTCAAATGA 432 0.3889 MISSHCVACKNQRIKCFSDCIFSPYFPHNDPQRYAIVHRIYGGSDIGRMLQQIPPYVRAQVADCLHYEAQCRVQDPIYGCFGITSQVVQQIHNTETELAKTEVLINILKFQSQQAENESNFHILRNTGQFQFGSTSSQDSWFK. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g03302 143 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Seca3g03302 143 Pfam Lateral organ boundaries (LOB) domain 6 101 IPR004883 -
Seca3g03302 143 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g03302 Seca-Chr3 59829061 59829492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g03302 1 121 AS2 family AT3G26660 48.760 6.91e-40 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca3g03302 LOB 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g03302 - - ccaj:109810657 167.548